Chlorine in PDB 7spp: Crystal Structure of the Sars-Cov-2 Receptor Binding Domain in Complex with Vnar 2C02

The structure of Crystal Structure of the Sars-Cov-2 Receptor Binding Domain in Complex with Vnar 2C02, PDB code: 7spp was solved by K.Shi, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.33 / 1.96
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	61.448, 74.229, 75.456, 90, 90, 90
R / Rfree (%)	18.8 / 22.4

The binding sites of Chlorine atom in the Crystal Structure of the Sars-Cov-2 Receptor Binding Domain in Complex with Vnar 2C02 (pdb code 7spp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Sars-Cov-2 Receptor Binding Domain in Complex with Vnar 2C02, PDB code: 7spp:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2 Receptor Binding Domain in Complex with Vnar 2C02


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sars-Cov-2 Receptor Binding Domain in Complex with Vnar 2C02 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl201 b:76.4 occ:1.00 HG C:SER77 2.7 92.4 1.0 HB2 C:ARG88 3.1 87.4 1.0 HB2 C:SER86 3.4 69.5 1.0 OG C:SER77 3.5 77.0 1.0 HG11 C:VAL75 3.6 80.7 1.0 HB3 C:ARG88 3.6 87.4 1.0 HB3 C:SER77 3.7 82.9 1.0 CB C:ARG88 3.8 72.8 1.0 HA C:GLU76 3.9 75.4 1.0 O C:VAL75 3.9 65.3 1.0 H C:ARG88 4.1 72.7 1.0 N C:ARG88 4.1 60.6 1.0 CB C:SER77 4.1 69.0 1.0 H C:SER77 4.2 69.9 1.0 N C:SER77 4.2 58.2 1.0 HB3 C:SER86 4.2 69.5 1.0 CB C:SER86 4.2 57.9 1.0 C C:LEU87 4.3 58.3 1.0 C C:GLU76 4.3 59.0 1.0 HA C:LEU87 4.4 65.6 1.0 HG23 C:THR38 4.4 72.7 1.0 HD3 C:ARG88 4.5 110.5 1.0 HB C:VAL75 4.5 82.3 1.0 CA C:GLU76 4.5 62.8 1.0 C C:VAL75 4.5 64.9 1.0 CG1 C:VAL75 4.5 67.2 1.0 C C:SER86 4.5 54.2 1.0 CA C:ARG88 4.5 65.4 1.0 N C:LEU87 4.5 53.8 1.0 O C:SER86 4.6 55.0 1.0 HD2 C:ARG88 4.6 110.5 1.0 CA C:LEU87 4.7 54.6 1.0 O C:LEU87 4.7 58.4 1.0 HG12 C:VAL75 4.8 80.7 1.0 O C:GLU76 4.8 59.3 1.0 CA C:SER77 4.8 61.9 1.0 N C:GLU76 4.8 63.6 1.0 H C:LEU87 4.8 64.6 1.0 CD C:ARG88 4.9 92.0 1.0 CG C:ARG88 4.9 82.4 1.0 HB2 C:SER77 4.9 82.9 1.0 HA C:ARG88 4.9 78.6 1.0 CB C:VAL75 5.0 68.6 1.0

O.C.Ubah, E.W.Lake, G.S.Gunaratne, J.P.Gallant, M.Fernie, A.J.Robertson, J.S.Marchant, T.D.Bold, R.A.Langlois, W.E.Matchett, J.M.Thiede, K.Shi, L.Yin, N.H.Moeller, S.Banerjee, L.Ferguson, M.Kovaleva, A.J.Porter, H.Aihara, A.M.Lebeau, C.J.Barelle. Mechanisms of Sars-Cov-2 Neutralization By Shark Variable New Antigen Receptors Elucidated Through X-Ray Crystallography. Nat Commun V. 12 7325 2021.
ISSN: ESSN 2041-1723
PubMed: 34916516
DOI: 10.1038/S41467-021-27611-Y