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Chlorine in PDB 7tek: Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide

Enzymatic activity of Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide

All present enzymatic activity of Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide:
3.4.22.69;

Protein crystallography data

The structure of Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide, PDB code: 7tek was solved by C.M.Goins, S.R.Stauffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.10 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.843, 53.561, 44.958, 90, 101.79, 90
R / Rfree (%) 20.8 / 27.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide (pdb code 7tek). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide, PDB code: 7tek:

Chlorine binding site 1 out of 1 in 7tek

Go back to Chlorine Binding Sites List in 7tek
Chlorine binding site 1 out of 1 in the Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sars-Cov-2 3CLPRO in Complex with N-(4-(1H-Pyrazol-4-Yl)Phenyl)-N-(3- Chlorobenzyl)-2-(Pyridin-3-Yl)Acetamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:59.1
occ:0.84
CL01 A:I2D401 0.0 59.1 0.8
C02 A:I2D401 1.8 61.1 0.8
C29 A:I2D401 2.7 58.5 0.8
C03 A:I2D401 2.8 57.9 0.8
CA A:ASP187 3.4 39.9 1.0
CB A:ASP187 3.5 35.9 1.0
CB A:MET165 3.5 47.0 1.0
CG A:MET165 3.8 49.3 1.0
O A:HIS164 3.8 41.3 1.0
CD2 A:HIS41 3.8 40.1 1.0
C28 A:I2D401 4.0 58.6 0.8
C A:ASP187 4.0 46.3 1.0
SD A:MET165 4.1 71.9 1.0
C04 A:I2D401 4.1 57.8 0.8
CB A:HIS164 4.2 37.6 1.0
CE A:MET49 4.2 47.8 1.0
C A:HIS164 4.3 36.9 1.0
NE2 A:HIS41 4.4 44.2 1.0
CA A:MET165 4.5 44.7 1.0
N A:ARG188 4.5 52.1 1.0
C27 A:I2D401 4.6 59.1 0.8
CZ A:PHE181 4.6 35.2 1.0
O A:ASP187 4.6 42.1 1.0
N A:ASP187 4.6 42.2 1.0
O A:VAL186 4.6 42.5 1.0
CE A:MET165 4.6 53.0 1.0
N A:MET165 4.7 37.1 1.0
CG A:HIS41 4.8 42.6 1.0
CD2 A:HIS164 4.9 32.7 1.0
CA A:HIS164 4.9 34.4 1.0
CG A:HIS164 5.0 35.7 1.0
CG A:ASP187 5.0 41.4 1.0

Reference:

A.Hooper, C.M.Goins, T.Romigh, E.Rico, A.A.Lindsey, N.Wang, J.Macondal, S.R.Stauffer. P1 Subpocket Optimization of A Non-Covalent Non-Canonical Sars-COV2 Inhibitor Based Upon ML300 To Be Published.
Page generated: Sun Jul 13 07:25:15 2025

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