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Chlorine in PDB 7ucc: Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form

Protein crystallography data

The structure of Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form, PDB code: 7ucc was solved by A.Kumar, M.C.Machius, G.Rudenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.23 / 1.94
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 47.939, 70.244, 122.17, 90, 90, 90
R / Rfree (%) 20.5 / 26.7

Other elements in 7ucc:

The structure of Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form (pdb code 7ucc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form, PDB code: 7ucc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7ucc

Go back to Chlorine Binding Sites List in 7ucc
Chlorine binding site 1 out of 3 in the Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl301

b:44.6
occ:1.00
HE F:ARG176 2.3 44.4 1.0
HH21 F:ARG176 2.8 35.1 1.0
HG3 F:ARG173 2.9 15.8 0.5
O F:HOH457 3.0 23.6 0.5
NE F:ARG176 3.2 36.5 1.0
HA F:ARG173 3.3 13.8 0.5
HA F:ARG173 3.3 13.8 0.5
HG3 F:ARG173 3.4 16.2 0.5
NH2 F:ARG176 3.5 28.8 1.0
HB2 F:ARG173 3.6 19.9 0.5
HG3 F:ARG176 3.6 22.5 1.0
HB3 F:ARG176 3.6 14.5 1.0
CG F:ARG173 3.7 12.7 0.5
HB2 F:ARG173 3.7 19.8 0.5
CZ F:ARG176 3.8 43.2 1.0
HD3 F:ARG173 3.9 17.2 0.5
HD3 F:ARG173 3.9 18.4 0.5
CB F:ARG173 3.9 16.1 0.5
CA F:ARG173 4.1 11.6 0.5
CG F:ARG173 4.1 13.0 0.5
CA F:ARG173 4.1 11.7 0.5
CG F:ARG176 4.1 18.3 1.0
CB F:ARG173 4.2 16.1 0.5
CB F:ARG176 4.2 11.6 1.0
CD F:ARG176 4.2 36.8 1.0
HB2 F:ARG176 4.2 14.5 1.0
CD F:ARG173 4.3 14.9 0.5
HH22 J:ARG292 4.3 66.4 1.0
HH22 F:ARG176 4.3 35.1 1.0
HD2 F:ARG173 4.4 18.4 0.5
HG2 F:ARG173 4.5 15.8 0.5
CD F:ARG173 4.6 13.9 0.5
HD3 F:ARG176 4.6 44.7 1.0
O F:HOH463 4.7 41.8 1.0
O F:ARG173 4.7 11.4 0.5
O F:ARG173 4.7 11.3 0.5
O F:HOH405 4.8 24.1 1.0
HB3 F:ARG173 4.9 19.9 0.5
HG3 F:ARG177 4.9 13.7 1.0
HD2 F:ARG176 4.9 44.7 1.0
O F:HOH457 4.9 28.2 0.5
HG2 F:ARG173 4.9 16.2 0.5
C F:ARG173 4.9 11.5 0.5
C F:ARG173 4.9 11.5 0.5

Chlorine binding site 2 out of 3 in 7ucc

Go back to Chlorine Binding Sites List in 7ucc
Chlorine binding site 2 out of 3 in the Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl302

b:39.0
occ:0.50
HE F:ARG177 2.7 14.8 1.0
O F:HOH432 2.8 41.2 1.0
HH22 F:ARG176 2.8 35.1 1.0
HH21 F:ARG177 2.9 15.8 1.0
NE F:ARG177 3.5 11.9 1.0
HH12 F:ARG176 3.6 22.8 1.0
NH2 F:ARG177 3.6 12.7 1.0
NH2 F:ARG176 3.7 28.8 1.0
HG2 F:ARG177 3.7 13.7 1.0
O F:HOH457 3.8 28.2 0.5
CZ F:ARG177 4.0 11.9 1.0
HH21 F:ARG176 4.2 35.1 1.0
NH1 F:ARG176 4.3 18.5 1.0
HH22 F:ARG177 4.3 15.8 1.0
CZ F:ARG176 4.5 43.2 1.0
CD F:ARG177 4.5 11.9 1.0
CG F:ARG177 4.5 11.2 1.0
HD3 F:ARG177 4.7 14.8 1.0
HG3 F:ARG177 4.9 13.7 1.0

Chlorine binding site 3 out of 3 in 7ucc

Go back to Chlorine Binding Sites List in 7ucc
Chlorine binding site 3 out of 3 in the Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Transcription Factor Fosb/Jund Bzip Domain in the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl303

b:72.2
occ:1.00
HG2 F:GLU207 3.2 19.3 1.0
HD23 F:LEU204 3.4 17.1 1.0
HB2 F:GLU207 3.7 12.7 1.0
HB3 F:GLU207 3.9 12.7 1.0
CG F:GLU207 4.0 15.6 1.0
HA F:LEU204 4.0 18.6 1.0
O F:HOH470 4.1 49.5 1.0
CB F:GLU207 4.1 12.9 1.0
HD21 F:LEU204 4.2 17.1 1.0
CD2 F:LEU204 4.2 13.7 1.0
HG11 J:VAL321 4.3 13.9 1.0
HZ2 J:LYS325 4.3 74.8 1.0
HG F:LEU204 4.7 18.9 1.0
HG3 F:GLU207 4.7 19.3 1.0
HB3 F:GLU203 4.8 26.5 1.0
CD F:GLU207 4.8 38.6 1.0
HD22 F:LEU204 4.8 17.1 1.0
HZ3 J:LYS325 4.8 74.8 1.0
O F:GLU203 4.8 13.7 1.0
O F:HOH423 4.9 22.0 1.0
CA F:LEU204 4.9 15.0 1.0

Reference:

A.Kumar, G.Aglyamova, Y.Y.Yim, A.O.Bailey, H.M.Lynch, R.T.Powell, N.D.Nguyen, Z.Rosenthal, W.N.Zhao, Y.Li, J.Chen, S.Fan, H.Lee, W.K.Russell, C.Stephan, A.J.Robison, S.J.Haggarty, E.J.Nestler, J.Zhou, M.Machius, G.Rudenko. Chemically Targeting the Redox Switch in AP1 Transcription Factor Delta Fosb. Nucleic Acids Res. V. 50 9548 2022.
ISSN: ESSN 1362-4962
PubMed: 36039764
DOI: 10.1093/NAR/GKAC710
Page generated: Sun Jul 13 07:45:50 2025

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