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Chlorine in PDB 7ucy: Integrin ALAPHIIBBETA3 Complex with Gantofiban

Protein crystallography data

The structure of Integrin ALAPHIIBBETA3 Complex with Gantofiban, PDB code: 7ucy was solved by F.-Y.Lin, J.Zhu, J.Zhu, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.98 / 2.35
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 258.55, 144.46, 105.1, 90, 90, 90
R / Rfree (%) 22.1 / 23.1

Other elements in 7ucy:

The structure of Integrin ALAPHIIBBETA3 Complex with Gantofiban also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Manganese (Mn) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Integrin ALAPHIIBBETA3 Complex with Gantofiban (pdb code 7ucy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Integrin ALAPHIIBBETA3 Complex with Gantofiban, PDB code: 7ucy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7ucy

Go back to Chlorine Binding Sites List in 7ucy
Chlorine binding site 1 out of 2 in the Integrin ALAPHIIBBETA3 Complex with Gantofiban


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Integrin ALAPHIIBBETA3 Complex with Gantofiban within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl504

b:67.7
occ:1.00
CE2 C:PHE10 4.2 46.9 1.0
CZ C:PHE10 4.3 46.9 1.0
CD2 C:PHE10 4.3 46.7 1.0
OE1 C:GLN444 4.4 45.4 1.0
CE1 C:PHE10 4.6 45.9 1.0
CG C:PHE10 4.6 46.4 1.0
CE1 C:PHE411 4.7 42.9 1.0
CD1 C:PHE10 4.7 45.8 1.0
CD1 C:PHE411 4.7 41.9 1.0
O C:HOH732 4.8 47.0 1.0
O C:PRO410 4.8 43.0 1.0

Chlorine binding site 2 out of 2 in 7ucy

Go back to Chlorine Binding Sites List in 7ucy
Chlorine binding site 2 out of 2 in the Integrin ALAPHIIBBETA3 Complex with Gantofiban


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Integrin ALAPHIIBBETA3 Complex with Gantofiban within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl2005

b:82.3
occ:1.00
O D:HOH2216 3.5 73.2 1.0
OE1 D:GLN106 3.6 78.5 1.0
OG D:SER243 3.9 68.7 1.0
NE D:ARG352 4.1 76.4 1.0
CD2 D:TYR110 4.4 80.2 1.0
CE1 D:PHE421 4.4 75.6 1.0
CE2 D:TYR110 4.4 80.6 1.0
NH2 D:ARG352 4.5 80.3 1.0
CZ D:ARG352 4.5 79.0 1.0
NE2 D:GLN82 4.5 91.4 1.0
CD1 D:PHE421 4.6 74.3 1.0
CZ D:PHE421 4.6 76.3 1.0
CD D:GLN106 4.7 75.8 1.0
O D:HOH2156 4.7 69.5 1.0
CD D:ARG352 4.8 77.0 1.0
O D:GLY420 4.8 70.2 1.0

Reference:

J.Zhu, A.Lin, J.Zhu, T.A.Springer. Integrin Alpha Iib Beta 3 Headpiece with Fab Complex with Bms Compound 4 in MN2+. To Be Published.
Page generated: Sun Jul 13 07:46:12 2025

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