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Chlorine in PDB 7udg: Integrin ALAPHIIBBETA3 Complex with Lotrafiban

Protein crystallography data

The structure of Integrin ALAPHIIBBETA3 Complex with Lotrafiban, PDB code: 7udg was solved by F.-Y.Lin, J.Zhu, J.Zhu, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.14 / 2.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 256.76, 144.17, 104.55, 90, 90, 90
R / Rfree (%) 21.3 / 23.5

Other elements in 7udg:

The structure of Integrin ALAPHIIBBETA3 Complex with Lotrafiban also contains other interesting chemical elements:

Calcium (Ca) 10 atoms
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Integrin ALAPHIIBBETA3 Complex with Lotrafiban (pdb code 7udg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Integrin ALAPHIIBBETA3 Complex with Lotrafiban, PDB code: 7udg:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7udg

Go back to Chlorine Binding Sites List in 7udg
Chlorine binding site 1 out of 3 in the Integrin ALAPHIIBBETA3 Complex with Lotrafiban


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Integrin ALAPHIIBBETA3 Complex with Lotrafiban within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl504

b:84.5
occ:1.00
CE2 C:PHE10 4.2 62.2 1.0
O C:HOH606 4.2 71.2 1.0
OE1 C:GLN444 4.3 60.6 1.0
CD2 C:PHE10 4.3 61.1 1.0
CZ C:PHE10 4.3 65.5 1.0
O C:HOH670 4.3 62.8 1.0
CE1 C:PHE10 4.6 65.0 1.0
CG C:PHE10 4.6 58.0 1.0
O C:PRO410 4.7 61.7 1.0
CD1 C:PHE10 4.7 62.4 1.0
CE1 C:PHE411 4.8 58.2 1.0
CD1 C:PHE411 4.9 58.8 1.0

Chlorine binding site 2 out of 3 in 7udg

Go back to Chlorine Binding Sites List in 7udg
Chlorine binding site 2 out of 3 in the Integrin ALAPHIIBBETA3 Complex with Lotrafiban


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Integrin ALAPHIIBBETA3 Complex with Lotrafiban within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl505

b:110.3
occ:1.00
NE1 C:TRP58 3.4 81.1 1.0
O C:ASP428 3.9 77.6 1.0
CB C:ASP428 4.0 81.3 1.0
CD1 C:TRP58 4.1 79.8 1.0
CA C:ASP428 4.2 84.1 1.0
CE2 C:TRP58 4.5 75.3 1.0
C C:ASP428 4.5 85.0 1.0
CZ2 C:TRP58 4.9 75.0 1.0

Chlorine binding site 3 out of 3 in 7udg

Go back to Chlorine Binding Sites List in 7udg
Chlorine binding site 3 out of 3 in the Integrin ALAPHIIBBETA3 Complex with Lotrafiban


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Integrin ALAPHIIBBETA3 Complex with Lotrafiban within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl2004

b:105.3
occ:1.00
O D:HOH2163 3.0 104.8 1.0
OE1 D:GLN106 3.5 110.1 1.0
OG D:SER243 3.9 104.6 1.0
NE D:ARG352 4.0 106.3 1.0
CE1 D:PHE421 4.0 116.2 1.0
CZ D:PHE421 4.2 118.8 1.0
NH2 D:ARG352 4.2 114.0 1.0
CZ D:ARG352 4.3 109.1 1.0
CD1 D:PHE421 4.3 109.8 1.0
NE2 D:GLN82 4.5 125.0 1.0
CD2 D:TYR110 4.5 120.2 1.0
CE2 D:TYR110 4.5 115.0 1.0
CD D:GLN106 4.5 111.1 1.0
CE2 D:PHE421 4.7 114.6 1.0
NE2 D:GLN106 4.7 110.0 1.0
CD D:ARG352 4.8 105.6 1.0
CG D:PHE421 4.8 104.9 1.0
O D:GLY420 5.0 99.1 1.0
CD2 D:PHE421 5.0 106.0 1.0

Reference:

J.Zhu, F.-Y.Lin, J.Zhu, T.A.Springer. Integrin Alpha Iib Beta 3 Headpiece with Fab Complex with BMS4-1 To Be Published.
Page generated: Sun Jul 13 07:46:36 2025

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