Chlorine in PDB 7uqc: Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174

The structure of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174, PDB code: 7uqc was solved by T.V.Lanz, W.H.Robinson, D.Fernandez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.11 / 2.65
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	195.027, 99.514, 136.414, 90, 112.81, 90
R / Rfree (%)	17.6 / 23.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 (pdb code 7uqc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174, PDB code: 7uqc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:45.0 occ:1.00 N B:ARG72 3.2 38.9 1.0 CA B:SER71 3.6 36.2 1.0 O B:ARG72 3.6 39.1 1.0 NZ B:LYS58 3.7 45.8 1.0 CB B:SER71 3.9 42.0 1.0 C B:SER71 3.9 37.8 1.0 CA B:GLY55 3.9 38.8 1.0 CE B:LYS58 4.0 38.9 1.0 CD1 B:ILE51 4.3 35.3 1.0 CA B:ARG72 4.3 38.4 1.0 O B:GLY55 4.3 44.8 1.0 C B:ARG72 4.4 39.6 1.0 CG B:ARG72 4.4 35.5 1.0 C B:GLY55 4.6 42.5 1.0 O B:ASP54 4.7 46.9 1.0 CB B:ARG72 4.8 39.3 1.0 N B:SER71 4.8 41.0 1.0 N B:GLY55 4.9 42.4 1.0 O B:SER70 4.9 39.7 1.0

Chlorine binding site 2 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl301 b:73.5 occ:1.00 OG1 G:THR36 3.0 32.0 1.0 O G:HOH404 3.2 35.8 1.0 N G:GLY73 3.4 36.1 1.0 OG G:SER72 3.8 37.9 1.0 CG2 G:VAL30 3.8 27.9 1.0 CA G:SER72 4.0 37.8 1.0 CB G:THR36 4.1 25.1 1.0 C G:SER72 4.2 38.3 1.0 CG2 G:THR36 4.2 30.3 1.0 CA G:GLY73 4.3 34.0 1.0 CB G:SER72 4.4 38.7 1.0 CD1 G:ILE56 4.5 26.8 1.0 CZ G:PHE76 4.5 31.8 1.0 CE1 G:PHE76 4.7 32.9 1.0 O G:GLY73 4.8 40.9 1.0

Chlorine binding site 3 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl302 b:41.7 occ:1.00 NZ G:LYS55 3.1 38.3 1.0 NZ G:LYS58 3.3 29.8 1.0 CE2 G:TYR54 3.5 32.9 1.0 CE2 H:TYR102 3.6 37.1 1.0 OH H:TYR102 3.7 44.9 1.0 CE G:LYS55 3.9 34.0 1.0 CD G:LYS55 3.9 29.0 1.0 CZ H:TYR102 3.9 40.9 1.0 CD2 G:TYR54 4.2 28.7 1.0 CE G:LYS58 4.2 26.9 1.0 CD G:LYS58 4.4 33.0 1.0 CD2 H:TYR102 4.5 39.2 1.0 CZ G:TYR54 4.6 37.2 1.0 CG G:LYS55 4.7 28.6 1.0 OH G:TYR54 4.7 44.1 1.0 CE1 H:TYR102 5.0 38.9 1.0

Chlorine binding site 4 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl301 b:48.6 occ:1.00 N H:ASP62 3.2 44.1 1.0 CG H:ASP62 3.7 53.4 1.0 CG G:PRO100 3.7 31.2 1.0 CA H:VAL61 3.8 39.4 1.0 CB H:ASP62 3.9 40.9 1.0 OD2 H:ASP62 3.9 51.1 1.0 CD G:PRO100 3.9 29.2 1.0 OD1 H:ASP62 3.9 57.7 1.0 CB G:PRO100 3.9 31.8 1.0 CG2 H:VAL61 3.9 38.7 1.0 C H:VAL61 4.0 41.7 1.0 CA H:ASP62 4.1 41.7 1.0 CB H:VAL61 4.4 38.0 1.0 O H:TYR60 4.5 39.3 1.0 NE1 G:TRP99 4.6 44.8 1.0 CD1 G:TRP99 4.7 43.4 1.0 N G:PRO100 4.7 37.2 1.0 CZ3 H:TRP47 4.8 32.4 1.0 N H:VAL61 4.9 31.8 1.0 CA G:PRO100 5.0 36.9 1.0

Chlorine binding site 5 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl302 b:76.0 occ:0.50 OD2 H:ASP211 3.5 58.4 1.0 NZ H:LYS209 3.5 58.1 1.0 CD H:LYS209 4.3 49.3 1.0 CE H:LYS209 4.4 52.5 1.0 CG H:ASP211 4.5 47.1 1.0 O H:HOH418 4.5 39.9 1.0 OD1 H:ASP211 4.9 46.7 1.0

Chlorine binding site 6 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ I:Cl302 b:64.3 occ:1.00 N I:TRP99 3.6 43.7 1.0 ND1 I:HIS98 3.7 46.5 1.0 CA I:HIS98 3.9 37.7 1.0 CB I:HIS98 4.1 40.5 1.0 C I:HIS98 4.3 43.7 1.0 CG I:HIS98 4.4 43.8 1.0 CB I:TRP99 4.4 51.9 1.0 CA I:TRP99 4.6 42.0 1.0 O I:SER97 4.7 40.8 1.0 O I:TRP99 4.8 40.6 1.0 CE1 I:HIS98 4.8 52.0 1.0

Chlorine binding site 7 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ I:Cl303 b:34.7 occ:1.00 OG1 I:THR36 3.1 35.0 1.0 N I:GLY73 3.4 37.1 1.0 CG2 I:VAL30 3.7 29.0 1.0 OG I:SER72 3.9 47.4 1.0 CA I:SER72 3.9 40.4 1.0 CB I:THR36 4.1 31.9 1.0 CG2 I:THR36 4.2 35.9 1.0 C I:SER72 4.2 37.8 1.0 CA I:GLY73 4.3 37.5 1.0 CD1 I:ILE56 4.4 30.5 1.0 CB I:SER72 4.5 41.9 1.0 CZ I:PHE76 4.7 39.1 1.0 O I:HOH418 4.8 39.1 1.0 O I:GLY73 4.8 45.3 1.0 CE1 I:PHE76 4.9 38.8 1.0

Chlorine binding site 8 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ J:Cl301 b:60.7 occ:1.00 N J:ASP62 3.2 50.0 1.0 CG J:ASP62 3.7 68.8 1.0 CA J:VAL61 3.8 39.7 1.0 CG I:PRO100 3.8 41.8 1.0 CB J:ASP62 3.9 56.4 1.0 OD2 J:ASP62 3.9 63.0 1.0 CG2 J:VAL61 3.9 42.0 1.0 C J:VAL61 4.0 44.7 1.0 CD I:PRO100 4.0 39.8 1.0 CA J:ASP62 4.1 51.2 1.0 OD1 J:ASP62 4.1 80.5 1.0 CB I:PRO100 4.1 45.4 1.0 CB J:VAL61 4.4 38.7 1.0 O J:TYR60 4.5 46.8 1.0 NE1 I:TRP99 4.6 59.5 1.0 CD1 I:TRP99 4.7 55.9 1.0 N J:VAL61 4.8 36.8 1.0 N I:PRO100 4.9 44.8 1.0

Chlorine binding site 9 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ J:Cl302 b:61.0 occ:1.00 OH J:TYR32 3.3 41.8 1.0 CE1 J:TYR32 3.6 42.9 1.0 N J:THR28 3.8 44.5 1.0 CZ J:TYR32 3.9 39.0 1.0 ND2 J:ASN31 4.1 43.9 1.0 CB J:PHE27 4.2 45.8 1.0 OG1 J:THR28 4.3 42.9 1.0 CB J:THR28 4.3 43.0 1.0 CA J:PHE27 4.5 44.9 1.0 CA J:THR28 4.6 48.1 1.0 C J:PHE27 4.7 42.4 1.0 CD1 J:TYR32 4.8 40.6 1.0 O J:THR28 4.9 43.9 1.0

Chlorine binding site 10 out of 12 in the Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Phospho-Glialcam Peptide AA370-389 with Fab MS39P2W174 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl301 b:45.4 occ:1.00 NZ E:LYS58 3.2 36.2 1.0 N E:ARG72 3.2 34.4 1.0 CA E:SER71 3.5 32.0 1.0 CA E:GLY55 3.7 36.1 1.0 CB E:SER71 3.8 33.4 1.0 C E:SER71 3.8 34.7 1.0 CE E:LYS58 4.0 33.2 1.0 O E:ARG72 4.0 41.4 1.0 CD1 E:ILE51 4.1 32.3 1.0 CB E:ARG72 4.1 36.4 1.0 O E:GLY55 4.2 39.0 1.0 CA E:ARG72 4.2 33.5 1.0 C E:GLY55 4.4 36.4 1.0 O E:ASP54 4.5 48.7 1.0 CG E:ARG72 4.6 33.8 1.0 C E:ARG72 4.6 39.3 1.0 O E:SER70 4.7 31.8 1.0 N E:SER71 4.7 31.8 1.0 N E:GLY55 4.7 41.1 1.0

T.V.Lanz, W.H.Robinson, D.Fernandez. Evolution of Antibody Reactivity Against Ebv EBNA1 to Molecular Mimicry with Glialcam To Be Published.