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Chlorine in PDB 7uuk: Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin

Protein crystallography data

The structure of Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin, PDB code: 7uuk was solved by P.J.Stogios, E.Evdokimova, R.Di Leo, E.Bordeleau, G.D.Wright, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.85 / 2.82
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.146, 107.405, 134.976, 90, 90, 90
R / Rfree (%) 19.7 / 25.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin (pdb code 7uuk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin, PDB code: 7uuk:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7uuk

Go back to Chlorine Binding Sites List in 7uuk
Chlorine binding site 1 out of 3 in the Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:45.7
occ:1.00
OE1 A:GLN147 3.2 38.8 1.0
NE2 A:GLN147 3.7 50.1 1.0
NE2 A:GLN159 3.8 57.6 1.0
CD A:GLN147 3.8 43.3 1.0
O B:HOH420 3.8 32.6 1.0
OH A:TYR172 4.0 58.4 1.0
CE2 A:TYR170 4.3 45.0 1.0
CD2 A:TYR170 4.3 46.6 1.0
CZ A:TYR170 4.5 43.5 1.0
CG A:TYR170 4.5 45.6 1.0
CD1 A:TYR170 4.7 45.9 1.0
CE1 A:TYR170 4.7 42.7 1.0
CD1 A:LEU162 4.8 44.2 1.0
CE2 A:PHE158 4.8 39.7 1.0
CZ A:TYR172 4.9 55.1 1.0
CD A:GLN159 5.0 54.8 1.0

Chlorine binding site 2 out of 3 in 7uuk

Go back to Chlorine Binding Sites List in 7uuk
Chlorine binding site 2 out of 3 in the Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:52.9
occ:1.00
NE2 B:GLN147 3.1 38.7 1.0
NE2 B:GLN159 3.4 48.1 1.0
OE1 B:GLN147 3.5 46.0 1.0
CD B:GLN147 3.7 38.4 1.0
OH B:TYR172 3.8 40.4 1.0
CD1 B:LEU162 4.2 44.3 1.0
CD B:GLN159 4.5 46.4 1.0
CE2 B:PHE158 4.5 36.0 1.0
CD2 B:TYR170 4.6 35.5 1.0
CZ B:TYR172 4.6 39.1 1.0
CE2 B:TYR170 4.6 35.0 1.0
OE1 B:GLN159 4.7 44.6 1.0
CG B:TYR170 4.7 33.7 1.0
CZ B:TYR170 4.8 36.6 1.0
CD1 B:TYR170 4.9 33.9 1.0
CE1 B:TYR170 5.0 33.0 1.0

Chlorine binding site 3 out of 3 in 7uuk

Go back to Chlorine Binding Sites List in 7uuk
Chlorine binding site 3 out of 3 in the Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Aminoglycoside Resistance Enzyme Apma, Complex with Tobramycin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:61.9
occ:1.00
OE1 C:GLN147 3.6 42.6 1.0
OH C:TYR172 3.9 35.2 1.0
NE2 C:GLN147 3.9 42.5 1.0
NE2 C:GLN159 4.0 49.5 1.0
CD2 C:TYR170 4.1 39.4 1.0
CG C:TYR170 4.2 37.5 1.0
CD C:GLN147 4.2 41.8 1.0
CE2 C:TYR170 4.3 38.4 1.0
CD1 C:TYR170 4.4 38.8 1.0
CZ C:TYR170 4.5 38.2 1.0
CE1 C:TYR170 4.6 37.7 1.0
CZ C:TYR172 4.7 37.2 1.0
CB C:TYR170 4.7 35.3 1.0
CE1 C:TYR172 4.8 42.8 1.0
CD1 C:LEU162 4.9 38.5 1.0

Reference:

P.J.Stogios, P.J.Stogios, E.Evdokimova, R.Di Leo, E.Bordeleau, G.D.Wright, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid). N/A N/A.
Page generated: Sun Jul 13 07:54:26 2025

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