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Chlorine in PDB 7vmg: Crystal Structure of Tubulin with 17J

Protein crystallography data

The structure of Crystal Structure of Tubulin with 17J, PDB code: 7vmg was solved by Z.Jifa, T.Lun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 91.24 / 2.39
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 105.33, 158.21, 182.48, 90, 90, 90
R / Rfree (%) 21 / 25

Other elements in 7vmg:

The structure of Crystal Structure of Tubulin with 17J also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Tubulin with 17J (pdb code 7vmg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Tubulin with 17J, PDB code: 7vmg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7vmg

Go back to Chlorine Binding Sites List in 7vmg
Chlorine binding site 1 out of 2 in the Crystal Structure of Tubulin with 17J


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Tubulin with 17J within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:74.7
occ:0.00
N A:LYS163 3.2 71.2 1.0
CB A:LYS163 3.4 74.1 1.0
N A:GLY162 3.5 61.0 1.0
CG A:LYS163 3.8 71.2 1.0
C A:TYR161 3.8 65.3 1.0
CA A:LYS163 3.9 78.4 1.0
C A:GLY162 4.1 65.8 1.0
CD A:LYS163 4.1 85.1 1.0
CA A:TYR161 4.2 62.7 1.0
CD A:LYS164 4.2 75.7 1.0
CA A:GLY162 4.2 65.5 1.0
CE A:LYS164 4.3 72.7 1.0
O A:TYR161 4.4 69.6 1.0
C A:LYS163 4.7 73.8 1.0
N A:LYS164 4.8 67.5 1.0
NZ A:LYS164 5.0 74.8 1.0

Chlorine binding site 2 out of 2 in 7vmg

Go back to Chlorine Binding Sites List in 7vmg
Chlorine binding site 2 out of 2 in the Crystal Structure of Tubulin with 17J


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Tubulin with 17J within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl503

b:120.8
occ:1.00
NE D:ARG251 3.8 70.2 1.0
C D:ASP161 4.0 70.8 1.0
O D:ASP161 4.1 71.7 1.0
NH2 D:ARG251 4.2 68.0 1.0
CA D:ASP161 4.2 63.9 1.0
O D:ARG162 4.3 56.5 1.0
CD1 D:ILE163 4.3 55.3 1.0
CZ D:ARG251 4.4 75.0 1.0
O D:PRO160 4.5 71.2 1.0
N D:ARG162 4.5 64.5 1.0
C D:ARG162 4.6 54.4 1.0
CZ3 C:TRP407 4.7 47.8 1.0
CD D:ARG251 4.7 59.0 1.0
NH2 D:ARG156 4.8 76.3 1.0
CA D:ARG162 4.9 58.8 1.0
OD2 D:ASP197 5.0 63.1 1.0
CB D:ASP161 5.0 66.1 1.0

Reference:

Z.Jifa, T.Lun. Crystal Structure of Tubulin with 17A To Be Published.
Page generated: Sun Jul 13 08:07:10 2025

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