Atomistry » Chlorine » PDB 7w4o-7wl9 » 7wak
Atomistry »
  Chlorine »
    PDB 7w4o-7wl9 »
      7wak »

Chlorine in PDB 7wak: Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp

Enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp

All present enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp:
6.1.1.17;

Protein crystallography data

The structure of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp, PDB code: 7wak was solved by V.Sharma, Y.Manickam, P.Babbar, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.65 / 2.78
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.21, 46.47, 94.92, 90, 112.05, 90
R / Rfree (%) 19.5 / 24.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp (pdb code 7wak). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp, PDB code: 7wak:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 1 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:61.9
occ:1.00
 OG A:SER538 2.8 78.6 1.0
N A:SER538 3.6 57.8 1.0
NZ A:LYS329 3.6 62.0 1.0
CB A:SER538 4.0 64.0 1.0
CB A:PHE537 4.2 49.3 1.0
CA A:SER538 4.4 61.0 1.0
CA A:PHE537 4.4 61.3 1.0
C A:PHE537 4.5 66.7 1.0
CE A:LYS329 4.7 57.3 1.0
O A:SER538 4.8 50.7 1.0

Chlorine binding site 2 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 2 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:92.7
occ:1.00
 NH2 A:ARG577 3.5 57.8 1.0
NH1 A:ARG577 3.6 64.7 1.0
OG A:SER563 3.9 75.5 1.0
CZ A:ARG577 4.0 59.1 1.0
CB A:SER563 4.5 87.1 1.0

Chlorine binding site 3 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 3 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1005

b:77.4
occ:1.00
 ND1 A:HIS742 2.8 95.2 1.0
CE1 A:HIS742 3.6 91.5 1.0
N A:HIS742 3.8 71.0 1.0
NZ A:LYS544 3.8 104.8 1.0
CG A:HIS742 3.9 91.1 1.0
OD1 A:ASP741 3.9 93.8 1.0
CB A:ASP741 4.0 85.4 1.0
CG A:ASP741 4.1 96.5 1.0
CB A:HIS742 4.2 80.3 1.0
CE A:LYS544 4.5 101.9 1.0
CA A:ASP741 4.5 74.9 1.0
CA A:HIS742 4.6 70.9 1.0
C A:ASP741 4.7 68.2 1.0
NE2 A:HIS742 4.8 88.8 1.0
CD2 A:HIS742 5.0 83.6 1.0

Chlorine binding site 4 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 4 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1006

b:78.2
occ:1.00
 NZ A:LYS551 2.6 101.9 1.0
OG A:SER548 2.8 102.6 1.0
CG2 A:VAL546 3.6 106.0 1.0
N A:SER548 3.9 76.0 1.0
N A:MET547 3.9 70.4 1.0
CE A:LYS551 4.1 105.0 1.0
CB A:SER548 4.1 90.6 1.0
CA A:VAL546 4.2 84.4 1.0
CB A:VAL546 4.4 84.7 1.0
CA A:SER548 4.6 81.0 1.0
C A:VAL546 4.6 79.3 1.0
CD A:LYS551 4.7 105.5 1.0
O A:THR545 4.8 88.7 1.0
C A:MET547 4.8 70.9 1.0
CA A:MET547 4.9 63.9 1.0

Chlorine binding site 5 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 5 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1007

b:101.7
occ:1.00
 CE A:LYS329 3.6 57.3 1.0
O A:ILE589 3.8 82.8 1.0
NZ A:LYS329 3.8 62.0 1.0
CB A:GLN592 4.2 92.6 1.0
CA A:ILE589 4.5 57.5 1.0
SD A:MET601 4.6 91.9 1.0
C A:ILE589 4.6 62.8 1.0
O A:PHE588 4.7 56.4 1.0
CD1 A:LEU540 4.7 55.5 1.0
C A:GLN592 4.7 92.9 1.0
CD A:LYS329 4.8 48.7 1.0

Reference:

V.K.Sharma, J.Chhibber-Goel, M.Yogavel, A.Sharma. Structural Characterization of Glutamyl-Trna Synthetase (Glurs) From Plasmodium Falciparum. Mol.Biochem.Parasitol. V. 253 11530 2022.
ISSN: ISSN 0166-6851
PubMed: 36370911
DOI: 10.1016/J.MOLBIOPARA.2022.111530
Page generated: Sun Jul 13 08:15:23 2025

Last articles

Mo in 2VPZ
Mo in 2VPY
Mo in 2VPX
Mo in 2VPW
Mo in 2MIN
Mo in 2V45
Mo in 2V3V
Mo in 2NYA
Mo in 2R8U
Mo in 2ONR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy