Chlorine in PDB 7wf6: Crystal Structure of SNX13 Rgs Domain

The structure of Crystal Structure of SNX13 Rgs Domain, PDB code: 7wf6 was solved by J.Xu, J.Zhu, J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.00 / 3.25
Space group	P 43 3 2
Cell size a, b, c (Å), α, β, γ (°)	165.328, 165.328, 165.328, 90, 90, 90
R / Rfree (%)	21.9 / 22.4

The binding sites of Chlorine atom in the Crystal Structure of SNX13 Rgs Domain (pdb code 7wf6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of SNX13 Rgs Domain, PDB code: 7wf6:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of SNX13 Rgs Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of SNX13 Rgs Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:108.8 occ:1.00 CE2 A:PHE401 4.4 133.1 1.0 CD2 A:PHE401 4.4 127.4 1.0 OH A:TYR449 4.7 86.5 1.0 CZ A:PHE401 4.7 128.9 1.0 CG A:PHE401 4.8 114.7 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of SNX13 Rgs Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of SNX13 Rgs Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl602 b:100.2 occ:1.00 OD1 A:ASN473 4.1 137.9 1.0 CE1 A:TYR446 4.2 94.1 1.0 CD1 A:TYR446 4.2 93.7 1.0 ND2 A:ASN473 4.3 142.3 1.0 OE2 A:GLU447 4.5 110.6 1.0 CG A:ASN473 4.5 136.1 1.0 CZ A:TYR446 4.6 92.6 1.0 CG A:TYR446 4.6 89.2 1.0 CD1 A:LEU472 4.8 119.0 1.0 CB A:LEU472 5.0 117.8 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of SNX13 Rgs Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of SNX13 Rgs Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl603 b:109.0 occ:1.00 OD2 A:ASP389 3.1 121.9 1.0 CB A:GLN385 4.3 119.9 1.0 CG A:ASP389 4.4 118.3 1.0 C A:GLN385 4.6 102.1 1.0 CE2 A:PHE386 4.6 98.6 1.0 N A:PHE386 4.6 96.5 1.0 CD2 A:PHE386 4.6 97.2 1.0 CZ A:PHE386 4.6 95.6 1.0 CE1 A:PHE386 4.6 94.6 1.0 CG A:PHE386 4.6 96.9 1.0 CD1 A:PHE386 4.6 96.3 1.0 O A:GLN385 4.7 101.8 1.0 CA A:PHE386 4.7 95.9 1.0 NH2 A:ARG511 4.8 144.6 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of SNX13 Rgs Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of SNX13 Rgs Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:103.3 occ:1.00 O A:GLU480 3.6 107.3 1.0 OD1 A:ASP484 3.7 114.2 1.0 CG A:ASP484 3.8 112.1 1.0 OD2 A:ASP484 3.9 119.3 1.0 O A:ILE481 4.1 104.0 1.0 C A:GLU480 4.3 99.9 1.0 CA A:ILE481 4.4 108.0 1.0 C A:ILE481 4.4 104.2 1.0 N A:ILE481 4.7 101.1 1.0 CB A:ASP484 4.7 103.5 1.0 N A:ASP484 4.7 92.8 1.0 CB A:GLU480 4.9 101.7 1.0

Y.Zhang, R.Chen, Y.Dong, J.Zhu, K.Su, J.Liu, J.Xu. Structural Studies Reveal Unique Non-Canonical Regulators of G Protein Signaling Homology (Rh) Domains in Sorting Nexins. J.Mol.Biol. V. 434 67823 2022.
ISSN: ESSN 1089-8638
PubMed: 36103920
DOI: 10.1016/J.JMB.2022.167823