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Chlorine in PDB 7xli: Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh)

Protein crystallography data

The structure of Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh), PDB code: 7xli was solved by J.M.M.Caaveiro, S.Valenciano-Bellido, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.321, 48.58, 140.7, 90, 90, 90
R / Rfree (%) 20.9 / 23.7

Other elements in 7xli:

The structure of Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh) (pdb code 7xli). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh), PDB code: 7xli:

Chlorine binding site 1 out of 1 in 7xli

Go back to Chlorine Binding Sites List in 7xli
Chlorine binding site 1 out of 1 in the Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:64.1
occ:1.00
CB A:ASN377 3.5 79.6 1.0
ND2 A:ASN377 3.8 80.0 1.0
N A:GLY378 3.9 80.1 1.0
CG A:ASN377 4.1 81.0 1.0
CG A:LYS379 4.3 77.3 1.0
CA A:ASN377 4.6 81.3 1.0
C A:ASN377 4.7 81.6 1.0
CA A:GLY378 4.7 80.7 1.0
CD A:LYS379 4.9 76.1 1.0
N A:LYS379 4.9 77.2 1.0

Reference:

S.Valenciano-Bellido, J.M.M.Caaveiro, M.Nakakido, D.Kuroda, I.Nakagawa, K.Tsumoto. Generation of A Specific Antibody Against the Linker-NEAT3 Region of the Isdh Protein of S. Aureus Inhibiting Bacterial Growth Under Iron Limiting Conditions To Be Published.
Page generated: Sun Jul 13 08:26:46 2025

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