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Chlorine in PDB 7zcy: Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms

Enzymatic activity of Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms

All present enzymatic activity of Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms:
3.5.1.5;

Protein crystallography data

The structure of Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms, PDB code: 7zcy was solved by L.Mazzei, S.Ciurli, M.Cianci, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 97.80 / 1.54
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 131.612, 131.612, 189.003, 90, 90, 120
R / Rfree (%) 13.7 / 16

Other elements in 7zcy:

The structure of Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms also contains other interesting chemical elements:

Fluorine (F) 1 atom
Nickel (Ni) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms (pdb code 7zcy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms, PDB code: 7zcy:

Chlorine binding site 1 out of 1 in 7zcy

Go back to Chlorine Binding Sites List in 7zcy
Chlorine binding site 1 out of 1 in the Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl605

b:80.4
occ:1.00
 CL C:IU9605 0.0 80.4 1.0
C12 C:IU9605 1.7 69.6 1.0
C11 C:IU9605 2.7 69.4 1.0
C7 C:IU9605 2.7 61.3 1.0
N C:IU9605 2.9 43.6 1.0
CA C:ARG388 3.6 27.9 0.7
CA C:ARG388 3.7 29.9 0.3
O C:GLN387 3.7 30.1 1.0
O C:ARG388 3.9 32.5 0.3
O C:ARG388 3.9 34.6 0.7
C6 C:IU9605 3.9 51.1 1.0
C10 C:IU9605 3.9 67.7 1.0
C8 C:IU9605 4.0 62.9 1.0
C C:ARG388 4.2 28.9 0.7
C C:ARG388 4.2 30.2 0.3
CB C:ARG388 4.2 29.2 0.7
CB C:ARG388 4.3 30.9 0.3
CG C:ARG388 4.3 30.9 0.7
C9 C:IU9605 4.5 69.4 1.0
C C:GLN387 4.5 30.6 1.0
N C:ARG388 4.6 27.7 0.7
N C:ARG388 4.6 29.5 0.3
O C:IU9605 4.6 39.5 1.0
C5 C:IU9605 4.7 38.7 1.0
CG C:ARG388 4.7 31.8 0.3
C4 C:IU9605 4.8 39.3 1.0

Reference:

L.Mazzei, S.Ciurli, M.Cianci. Sporosarcina Pasteurii Urease (Spu) Co-Crystallized in the Presence of An Ebselen-Derivative and Bound to Se Atoms To Be Published.
Page generated: Sun Jul 13 08:45:14 2025

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