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Chlorine in PDB 8b3l: Hen Egg White Lysozyme 2S in Situ Crystallization

Protein crystallography data

The structure of Hen Egg White Lysozyme 2S in Situ Crystallization, PDB code: 8b3l was solved by A.Henkel, M.Galchenkova, O.Yefanov, J.Hakanpaeae, H.N.Chapman, D.Oberthuer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.60 / 1.71
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.2, 79.2, 37.8, 90, 90, 90
R / Rfree (%) 17.4 / 20.9

Other elements in 8b3l:

The structure of Hen Egg White Lysozyme 2S in Situ Crystallization also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg White Lysozyme 2S in Situ Crystallization (pdb code 8b3l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Hen Egg White Lysozyme 2S in Situ Crystallization, PDB code: 8b3l:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8b3l

Go back to Chlorine Binding Sites List in 8b3l
Chlorine binding site 1 out of 2 in the Hen Egg White Lysozyme 2S in Situ Crystallization


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg White Lysozyme 2S in Situ Crystallization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:25.3
occ:1.00
HD22 A:ASN113 2.4 21.5 1.0
HB2 A:ASN113 2.9 21.2 1.0
HA A:ALA110 3.1 17.2 1.0
HG12 A:VAL109 3.1 23.4 0.6
ND2 A:ASN113 3.2 17.9 1.0
O A:HOH353 3.4 26.2 1.0
HD2 A:ARG114 3.6 27.8 1.0
CB A:ASN113 3.6 17.7 1.0
HB3 A:ASN113 3.6 21.2 1.0
HG3 A:ARG114 3.7 22.8 1.0
HD21 A:ASN113 3.8 21.5 1.0
HG23 A:VAL109 3.8 25.0 0.4
CG A:ASN113 3.9 18.0 1.0
CA A:ALA110 4.0 14.3 1.0
O A:VAL109 4.0 17.0 0.4
O A:VAL109 4.0 17.0 0.6
CG1 A:VAL109 4.1 19.5 0.6
HB2 A:ALA110 4.3 18.8 1.0
CD A:ARG114 4.3 23.1 1.0
C A:VAL109 4.3 13.9 0.4
C A:VAL109 4.3 13.8 0.6
HG11 A:VAL109 4.3 23.4 0.6
N A:ALA110 4.3 11.8 1.0
HB A:VAL109 4.4 24.9 0.4
HD3 A:ARG114 4.4 27.8 1.0
CG A:ARG114 4.4 19.0 1.0
HG13 A:VAL109 4.5 23.4 0.6
CB A:ALA110 4.6 15.6 1.0
CG2 A:VAL109 4.7 20.8 0.4
HG2 A:ARG114 4.7 22.8 1.0
H A:ASN113 4.8 20.0 1.0
HB A:VAL109 4.8 24.9 0.6
HB1 A:ALA110 4.8 18.8 1.0
H A:ALA110 4.8 14.2 1.0
HH11 A:ARG114 4.9 25.6 1.0
CA A:ASN113 4.9 17.1 1.0
CB A:VAL109 5.0 20.7 0.6
CB A:VAL109 5.0 20.7 0.4
C A:ALA110 5.0 15.2 1.0

Chlorine binding site 2 out of 2 in 8b3l

Go back to Chlorine Binding Sites List in 8b3l
Chlorine binding site 2 out of 2 in the Hen Egg White Lysozyme 2S in Situ Crystallization


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg White Lysozyme 2S in Situ Crystallization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:35.5
occ:1.00
H A:GLY26 2.2 17.1 1.0
HG2 A:GLN121 2.6 64.4 1.0
HG A:SER24 2.7 28.5 1.0
HB2 A:SER24 2.8 24.6 1.0
OG A:SER24 2.9 23.7 1.0
HA A:GLN121 3.0 32.9 1.0
HA3 A:GLY26 3.0 13.9 1.0
N A:GLY26 3.0 14.2 1.0
CB A:SER24 3.3 20.5 1.0
HD11 A:ILE124 3.4 47.5 1.0
HG12 A:ILE124 3.5 30.2 1.0
CG A:GLN121 3.5 53.6 1.0
CA A:GLY26 3.5 11.5 1.0
HG23 A:VAL120 3.7 32.5 1.0
HG3 A:GLN121 3.7 64.4 1.0
CA A:GLN121 3.8 27.4 1.0
HD13 A:ILE124 3.8 47.5 1.0
H A:LEU25 3.8 21.9 1.0
N A:LEU25 3.9 18.2 1.0
CD1 A:ILE124 3.9 39.5 1.0
HB3 A:SER24 4.0 24.6 1.0
C A:SER24 4.0 22.2 1.0
HA2 A:GLY26 4.1 13.9 1.0
HB3 A:LEU25 4.1 21.7 1.0
CB A:GLN121 4.2 42.0 1.0
C A:LEU25 4.2 14.8 1.0
CG1 A:ILE124 4.2 25.1 1.0
N A:GLN121 4.2 26.6 1.0
HE21 A:GLN121 4.2 99.2 1.0
H A:ASN27 4.3 17.3 1.0
CA A:SER24 4.3 20.2 1.0
HB3 A:GLN121 4.4 50.4 1.0
O A:VAL120 4.5 21.2 1.0
CA A:LEU25 4.5 12.9 1.0
CD A:GLN121 4.5 80.1 1.0
C A:VAL120 4.5 22.5 1.0
H A:GLN121 4.5 32.0 1.0
O A:SER24 4.6 16.5 1.0
CG2 A:VAL120 4.6 27.0 1.0
C A:GLY26 4.6 18.9 1.0
HG13 A:ILE124 4.6 30.2 1.0
NE2 A:GLN121 4.7 82.6 1.0
HA A:SER24 4.7 24.3 1.0
N A:ASN27 4.7 14.4 1.0
HG21 A:VAL120 4.8 32.5 1.0
HG21 A:ILE124 4.8 34.7 1.0
CB A:LEU25 4.8 18.1 1.0
HD12 A:ILE124 4.9 47.5 1.0
HG23 A:ILE124 4.9 34.7 1.0
C A:GLN121 5.0 22.2 1.0

Reference:

A.Henkel, M.Galchenkova, J.Maracke, O.Yefanov, J.Hakanpaa, J.R.Mesters, H.N.Chapman, D.Oberthur. Jinxed: Just in Time Crystallization For Easy Structure Determination of Biological Macromolecules Biorxiv 2022.
ISSN: ISSN 2692-8205
DOI: 10.1101/2022.10.26.513656
Page generated: Sun Jul 13 09:24:26 2025

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