Chlorine in PDB 8c8j: Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

Enzymatic activity of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

All present enzymatic activity of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp:
2.7.7.49;

Protein crystallography data

The structure of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp, PDB code: 8c8j was solved by C.E.Nichols, T.B.Walpole, E.Baldwin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	59.66 / 2.10
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	119.349, 84.528, 107.938, 90, 91.48, 90
*R / R_free (%)*	20.8 / 23.8

Other elements in 8c8j:

The structure of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp (pdb code 8c8j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp, PDB code: 8c8j:

Chlorine binding site 1 out of 1 in 8c8j

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Chlorine Binding Sites List in 8c8j

Chlorine binding site 1 out of 1 in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1122 b:93.0 occ:1.00	OG1	A:THR973	2.9	52.2	1.0
	O	A:HOH1394	2.9	78.3	1.0
	N	A:ASP1009	3.1	57.5	1.0
	CB	A:ASP1009	3.4	59.9	1.0
	CA	A:THR973	3.8	49.9	1.0
	CA	A:ASP1009	3.8	57.9	1.0
	N	A:THR973	3.9	50.1	1.0
	CB	A:THR973	3.9	51.2	1.0
	CA	A:ILE1008	3.9	57.6	1.0
	C	A:ILE1008	3.9	57.4	1.0
	O	A:LYS1007	4.0	57.6	1.0
	C	A:LYS972	4.3	51.0	1.0
	CB	A:LYS972	4.6	54.9	1.0
	CG2	A:ILE1008	4.7	58.2	1.0
	CG	A:LYS972	4.7	60.0	1.0
	O	A:LYS972	4.7	50.8	1.0
	CG2	A:THR973	4.7	51.1	1.0
	CG	A:ASP1009	4.8	62.1	1.0
	OD2	A:ASP1012	4.8	54.9	1.0
	C	A:LYS1007	4.8	58.1	1.0
	N	A:ILE1008	4.8	57.8	1.0
	CB	A:ILE1008	4.8	57.7	1.0
	O2	A:EDO1119	4.9	85.9	1.0
	CD1	A:ILE1008	4.9	58.8	1.0

Reference:

C.E.Nichols, T.B.Walpole, E.Baldwin. Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp To Be Published.

Page generated: Sun Jul 13 10:02:40 2025

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