Chlorine in PDB 8c9f: Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.

Enzymatic activity of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.

All present enzymatic activity of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.:
6.1.1.5;

Protein crystallography data

The structure of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue., PDB code: 8c9f was solved by A.Brkic, M.Leibundgut, J.Jablonska, V.Zanki, Z.Car, V.Petrovic Perokovic, N.Ban, I.Gruic-Sovulj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.81 / 3.10
*Space group*	P 3₁ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	127.04, 127.04, 163.38, 90, 90, 120
*R / R_free (%)*	23.9 / 27.6

Other elements in 8c9f:

The structure of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue. also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Sodium	(Na)	4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue. (pdb code 8c9f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue., PDB code: 8c9f:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8c9f

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Chlorine Binding Sites List in 8c9f

Chlorine binding site 1 out of 4 in the Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1008 b:112.1 occ:1.00	OD2	A:ASP501	3.2	125.8	1.0
	N	A:GLU498	3.6	111.7	1.0
	CA	A:ARG497	3.6	114.5	1.0
	O	A:GLU496	3.9	132.8	1.0
	CG	A:ARG497	4.1	99.2	1.0
	C	A:ARG497	4.1	94.7	1.0
	CB	A:ARG497	4.2	123.8	1.0
	CG	A:ASP501	4.4	114.3	1.0
	CB	A:GLU498	4.5	117.6	1.0
	N	A:ARG497	4.6	88.2	1.0
	CA	A:GLU498	4.7	103.0	1.0
	C	A:GLU496	4.7	98.8	1.0
	CB	A:ASP501	4.9	107.0	1.0

Chlorine binding site 2 out of 4 in 8c9f

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Chlorine Binding Sites List in 8c9f

Chlorine binding site 2 out of 4 in the Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1012 b:112.0 occ:1.00	CG	A:LYS519	3.5	108.8	1.0
	CE	A:LYS519	3.6	87.5	1.0
	N	A:ALA499	3.7	105.1	1.0
	CB	A:ALA499	3.8	123.3	1.0
	CD	A:LYS519	4.0	84.5	1.0
	N	A:LYS519	4.2	100.2	1.0
	CA	A:ALA499	4.2	110.5	1.0
	OG1	A:THR518	4.3	133.8	1.0
	C	A:GLU498	4.5	105.3	1.0
	CB	A:LYS519	4.6	100.4	1.0
	CA	A:THR518	4.7	120.8	1.0
	CA	A:GLU498	4.7	103.0	1.0
	NZ	A:LYS519	4.8	113.2	1.0
	CG	A:GLU498	4.8	132.3	1.0
	CB	A:THR518	5.0	109.0	1.0
	C	A:THR518	5.0	113.0	1.0

Chlorine binding site 3 out of 4 in 8c9f

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Chlorine Binding Sites List in 8c9f

Chlorine binding site 3 out of 4 in the Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1013 b:138.7 occ:1.00	CG2	A:THR106	3.5	135.5	1.0
	NE	A:ARG113	3.8	120.3	1.0
	CD	A:ARG113	3.8	90.3	1.0
	OG1	A:THR106	4.0	110.8	1.0
	CG	A:ARG113	4.1	108.1	1.0
	CB	A:THR106	4.4	130.4	1.0
	OD1	A:ASN112	4.6	152.5	1.0

Chlorine binding site 4 out of 4 in 8c9f

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Chlorine Binding Sites List in 8c9f

Chlorine binding site 4 out of 4 in the Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue.

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Priestia Megaterium Inactive High Motif Mutant of TYPE1 Isoleucyl-Trna Synthetase Complexed with An Isoleucyl-Adenylate Analogue. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl1014 b:166.8 occ:1.00	OG1	A:THR233	3.5	122.1	1.0
	N	A:THR233	3.5	133.7	1.0
	CA	A:THR232	4.0	136.4	1.0
	CG2	A:THR233	4.2	138.7	1.0
	CB	A:THR233	4.2	118.1	1.0
	C	A:THR232	4.3	124.8	1.0
	CA	A:THR233	4.4	112.1	1.0
	OG1	A:THR232	4.5	131.9	1.0
	O	A:TRP231	4.7	157.0	1.0
	CB	A:THR232	4.7	135.4	1.0
	OG1	A:THR234	4.7	130.2	1.0
	N	A:THR234	4.8	106.9	1.0
	CZ3	A:TRP231	5.0	162.7	1.0
	C	A:THR233	5.0	111.1	1.0

Reference:

A.Brkic, M.Leibundgut, J.Jablonska, V.Zanki, Z.Car, V.Petrovic Perokovic, N.Ban, I.Gruic-Sovulj. Antibiotic Hyper-Resistance in A Class I Aminoacyl-Trna Synthetase with Altered Active Site Signature Motif To Be Published.

Page generated: Sun Jul 13 10:02:58 2025

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