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Chlorine in PDB 8cbf: Sars-Cov-2 Delta-Rbd Complexed with Omi-42 and Beta-49 Fabs

Protein crystallography data

The structure of Sars-Cov-2 Delta-Rbd Complexed with Omi-42 and Beta-49 Fabs, PDB code: 8cbf was solved by D.Zhou, J.Ren, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.14 / 2.33
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 177.002, 144.275, 49.665, 90, 90, 90
R / Rfree (%) 21.5 / 25.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Sars-Cov-2 Delta-Rbd Complexed with Omi-42 and Beta-49 Fabs (pdb code 8cbf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Sars-Cov-2 Delta-Rbd Complexed with Omi-42 and Beta-49 Fabs, PDB code: 8cbf:

Chlorine binding site 1 out of 1 in 8cbf

Go back to Chlorine Binding Sites List in 8cbf
Chlorine binding site 1 out of 1 in the Sars-Cov-2 Delta-Rbd Complexed with Omi-42 and Beta-49 Fabs


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sars-Cov-2 Delta-Rbd Complexed with Omi-42 and Beta-49 Fabs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:56.4
occ:1.00
O A:HOH419 3.1 46.0 1.0
N A:TRP47 3.3 47.7 1.0
N B:PHE100 3.4 43.0 1.0
CA B:THR99 3.9 50.3 1.0
CA A:GLU46 3.9 49.3 1.0
CB A:TRP47 4.0 43.2 1.0
C A:GLU46 4.1 49.2 1.0
CD1 B:PHE100 4.1 47.4 1.0
C B:THR99 4.1 46.8 1.0
O A:LEU45 4.1 46.7 1.0
CA A:TRP47 4.2 46.2 1.0
CB B:PHE100 4.2 43.3 1.0
CA B:PHE100 4.3 47.0 1.0
O B:PHE100 4.4 45.5 1.0
CB B:THR99 4.4 54.9 1.0
CG A:GLU46 4.4 61.9 1.0
O A:TRP47 4.6 42.3 1.0
CG B:PHE100 4.7 43.5 1.0
CG2 B:THR99 4.7 61.1 1.0
O B:TRP98 4.7 53.4 1.0
CB A:GLU46 4.7 50.6 1.0
O B:HOH446 4.8 51.9 1.0
O B:HOH468 4.8 61.2 1.0
N A:GLU46 4.8 44.7 1.0
C B:PHE100 4.8 45.7 1.0
C A:LEU45 4.9 45.4 1.0
C A:TRP47 4.9 39.3 1.0

Reference:

D.I.Stuart, D.Zhou, J.Ren, D.I.Stuart. N/A N/A.
Page generated: Sun Jul 13 10:05:04 2025

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