Chlorine in PDB 8cgk: Lincomycin and Avilamycin Bound to the 50S Subunit

The structure of Lincomycin and Avilamycin Bound to the 50S Subunit also contains other interesting chemical elements:

Potassium	(K)	81 atoms
Zinc	(Zn)	1 atom
Magnesium	(Mg)	260 atoms

The binding sites of Chlorine atom in the Lincomycin and Avilamycin Bound to the 50S Subunit (pdb code 8cgk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Lincomycin and Avilamycin Bound to the 50S Subunit, PDB code: 8cgk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl3003 b:61.1 occ:1.00 CLAI a:6UQ3003 0.0 61.1 1.0 CAB a:6UQ3003 1.7 54.8 1.0 CAA a:6UQ3003 2.7 55.4 1.0 CAC a:6UQ3003 2.7 56.2 1.0 OAH a:6UQ3003 2.9 56.0 1.0 CDF a:6UQ3003 3.0 56.9 1.0 NH1 l:ARG59 3.0 99.5 1.0 CG2 l:THR54 3.4 37.5 1.0 NH2 l:ARG59 3.5 99.8 1.0 CB l:THR54 3.6 36.1 1.0 CZ l:ARG59 3.6 98.6 1.0 NH2 l:ARG50 4.0 37.0 1.0 CAF a:6UQ3003 4.0 59.0 1.0 CAD a:6UQ3003 4.0 57.6 1.0 NH1 l:ARG50 4.2 37.2 1.0 CA l:ARG51 4.2 29.5 1.0 O l:ARG51 4.3 30.9 1.0 OG1 l:THR54 4.4 37.2 1.0 CZ l:ARG50 4.5 37.2 1.0 CG l:ARG51 4.5 34.8 1.0 CAE a:6UQ3003 4.6 59.2 1.0 CB l:ARG51 4.7 31.5 1.0 N l:ARG55 4.7 36.7 1.0 C l:ARG51 4.8 29.9 1.0 CA l:THR54 4.8 35.2 1.0 NE l:ARG59 4.8 95.1 1.0 C l:THR54 4.9 37.0 1.0

Chlorine binding site 2 out of 2 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl3003 b:71.1 occ:1.00 CLAG a:6UQ3003 0.0 71.1 1.0 CAF a:6UQ3003 1.7 59.0 1.0 CAA a:6UQ3003 2.7 55.4 1.0 CAE a:6UQ3003 2.8 59.2 1.0 CDE a:6UQ3003 2.9 60.5 1.0 OAH a:6UQ3003 2.9 56.0 1.0 ODD a:6UQ3003 3.2 61.4 1.0 CAB a:6UQ3003 4.0 54.8 1.0 CAD a:6UQ3003 4.1 57.6 1.0 NH1 l:ARG50 4.2 37.2 1.0 NE l:ARG51 4.5 41.5 1.0 CAC a:6UQ3003 4.5 56.2 1.0 OE2 l:GLU47 4.6 40.8 1.0 NH2 l:ARG51 4.6 48.5 1.0 CZ l:ARG51 4.9 47.6 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.