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Chlorine in PDB 8dco: Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42

Enzymatic activity of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42

All present enzymatic activity of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42:
5.1.3.13;

Protein crystallography data

The structure of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42, PDB code: 8dco was solved by J.B.Thoden, D.F.Xiang, M.K.Ghosh, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.83 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.609, 73.609, 152.346, 90, 90, 90
R / Rfree (%) 20.4 / 25.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42 (pdb code 8dco). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42, PDB code: 8dco:

Chlorine binding site 1 out of 1 in 8dco

Go back to Chlorine Binding Sites List in 8dco
Chlorine binding site 1 out of 1 in the Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Gdp-D-Glycero-4-Keto-D-Lyxo-Heptose-3,5- Epimerase From Campylobacter Jejuni, Serotype Hs:42 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:25.8
occ:1.00
 O A:HOH389 3.0 33.5 1.0
NZ A:LYS102 3.2 18.0 1.0
C A:TRP162 3.4 25.5 1.0
N A:PRO163 3.5 26.3 1.0
C A:ASP161 3.5 22.0 1.0
N A:TRP162 3.6 23.2 1.0
O A:ASP161 3.7 23.5 1.0
O A:TRP162 3.7 23.5 1.0
CA A:TRP162 3.8 23.6 1.0
CB A:ASP161 3.9 22.1 1.0
CD A:PRO163 4.0 25.2 1.0
CA A:PRO163 4.0 26.9 1.0
CG A:PRO163 4.0 26.9 1.0
CA A:ASP161 4.2 21.5 1.0
O A:HOH447 4.4 33.0 1.0
CB A:PRO163 4.5 28.0 1.0
CE1 A:HIS84 4.5 19.4 1.0
ND1 A:HIS84 4.5 18.4 1.0
CE A:LYS102 4.7 17.6 1.0

Reference:

M.K.Ghosh, D.F.Xiang, J.B.Thoden, H.M.Holden, F.M.Raushel. C3- and C3/C5-Epimerases Required For the Biosynthesis of the Capsular Polysaccharides From Campylobacter Jejuni . Biochemistry V. 61 2036 2022.
ISSN: ISSN 0006-2960
PubMed: 36093987
DOI: 10.1021/ACS.BIOCHEM.2C00364
Page generated: Sun Jul 13 10:46:37 2025

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