Atomistry » Chlorine » PDB 8dsm-8e6h » 8duz
Atomistry »
  Chlorine »
    PDB 8dsm-8e6h »
      8duz »

Chlorine in PDB 8duz: Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic

Protein crystallography data

The structure of Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic, PDB code: 8duz was solved by P.T.Beernink, B.P.Beernink, P.A.Rice, S.Ram, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.16 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.61, 64.19, 110.81, 90, 97.12, 90
R / Rfree (%) 18.9 / 23.4

Other elements in 8duz:

The structure of Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic (pdb code 8duz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic, PDB code: 8duz:

Chlorine binding site 1 out of 1 in 8duz

Go back to Chlorine Binding Sites List in 8duz
Chlorine binding site 1 out of 1 in the Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:56.2
occ:1.00
H A:GLN86 2.2 36.5 1.0
HA A:ASN85 3.0 37.9 1.0
N A:GLN86 3.1 30.4 1.0
HB3 A:GLN86 3.1 53.5 1.0
OD1 A:ASN85 3.6 38.3 1.0
CB A:GLN86 3.8 44.6 1.0
CA A:ASN85 3.8 31.6 1.0
HB2 A:GLN86 3.8 53.5 1.0
C A:ASN85 3.9 35.7 1.0
CG B:HIS117 3.9 26.5 1.0
HB3 B:HIS117 3.9 31.1 1.0
CA A:GLN86 4.0 35.9 1.0
CD2 B:HIS117 4.0 28.6 1.0
ND1 B:HIS117 4.1 29.4 1.0
NE2 B:HIS117 4.2 25.3 1.0
CG A:ASN85 4.2 31.1 1.0
H A:ASN87 4.2 40.4 1.0
CE1 B:HIS117 4.2 32.4 1.0
HD2 B:HIS117 4.3 34.3 1.0
HD1 B:HIS117 4.3 35.3 1.0
CB B:HIS117 4.4 26.0 1.0
O A:TYR84 4.5 30.0 1.0
CB A:ASN85 4.5 30.2 1.0
HB2 B:HIS117 4.5 31.1 1.0
HE1 B:HIS117 4.7 38.8 1.0
HA A:GLN86 4.7 43.0 1.0
HB2 A:ASN85 4.8 36.2 1.0
N A:ASN87 4.8 33.6 1.0
N A:ASN85 4.9 29.6 1.0
C A:GLN86 5.0 37.8 1.0
O B:HOH482 5.0 44.3 1.0

Reference:

P.T.Beernink, B.P.Beernink, S.Ram. Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic To Be Published.
Page generated: Sun Jul 13 10:54:20 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy