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Chlorine in PDB 8dyd: Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate

Enzymatic activity of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate

All present enzymatic activity of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate:
1.3.5.1;

Protein crystallography data

The structure of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate, PDB code: 8dyd was solved by P.Sharma, E.Maklashina, G.Cecchini, T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.49 / 1.52
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.048, 103.206, 126.237, 90, 90, 90
R / Rfree (%) 15.7 / 18.4

Other elements in 8dyd:

The structure of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate also contains other interesting chemical elements:

Potassium (K) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate (pdb code 8dyd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate, PDB code: 8dyd:

Chlorine binding site 1 out of 1 in 8dyd

Go back to Chlorine Binding Sites List in 8dyd
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Sdha-SDHAF2-SDHAF4 Assembly Intermediate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl705

b:36.9
occ:1.00
 H A:ALA334 2.4 32.0 1.0
H A:VAL333 2.5 32.9 1.0
HB A:VAL333 2.7 43.2 1.0
HA A:ALA331 3.0 26.2 1.0
HB1 A:ALA331 3.0 26.7 1.0
HD2 A:PRO332 3.2 35.6 1.0
N A:ALA334 3.2 26.6 1.0
N A:VAL333 3.3 27.4 1.0
O A:HOH1212 3.3 40.5 1.0
HB3 A:ALA334 3.4 27.8 1.0
C A:ALA331 3.4 27.3 1.0
CA A:ALA331 3.5 21.8 1.0
CB A:VAL333 3.5 36.0 1.0
N A:PRO332 3.6 26.0 1.0
HG23 A:VAL333 3.7 48.6 1.0
CB A:ALA331 3.7 22.2 1.0
CA A:VAL333 3.8 34.0 1.0
CD A:PRO332 3.8 29.7 1.0
HB2 A:ALA334 3.9 27.8 1.0
O A:ALA331 3.9 24.9 1.0
CB A:ALA334 4.0 23.1 1.0
C A:VAL333 4.0 27.2 1.0
O A:HOH1139 4.1 41.1 1.0
CG2 A:VAL333 4.1 40.5 1.0
CA A:ALA334 4.2 26.1 1.0
H A:LYS335 4.2 26.7 1.0
HB2 A:ALA331 4.2 26.7 1.0
HD3 A:PRO332 4.2 35.6 1.0
C A:PRO332 4.3 26.8 1.0
HB3 A:ALA331 4.4 26.7 1.0
HG21 A:VAL333 4.5 48.6 1.0
CA A:PRO332 4.6 27.3 1.0
HG12 A:VAL333 4.7 47.9 1.0
HA A:VAL333 4.7 40.9 1.0
CG1 A:VAL333 4.7 39.9 1.0
HB1 A:ALA334 4.9 27.8 1.0
N A:LYS335 4.9 22.3 1.0
HA A:ALA334 4.9 31.3 1.0
N A:ALA331 4.9 21.4 1.0
HG22 A:VAL333 5.0 48.6 1.0

Reference:

P.Sharma, E.Maklashina, G.Cecchini, T.M.Iverson. Crystal Structure of Human Sdha-ADHAF2-SDHAF4 Assembly Intermediate To Be Published.
Page generated: Sun Jul 13 10:56:17 2025

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