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Chlorine in PDB 8efz: Crystal Structure of Ccnikz-II, Apoprotein

Protein crystallography data

The structure of Crystal Structure of Ccnikz-II, Apoprotein, PDB code: 8efz was solved by P.J.Stogios, E.Evdokimova, P.Diep, A.Yakunin, K.Mahadevan, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.71 / 2.38
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.606, 110.942, 73.686, 90, 113.72, 90
R / Rfree (%) 22.2 / 25.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ccnikz-II, Apoprotein (pdb code 8efz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Ccnikz-II, Apoprotein, PDB code: 8efz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8efz

Go back to Chlorine Binding Sites List in 8efz
Chlorine binding site 1 out of 2 in the Crystal Structure of Ccnikz-II, Apoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ccnikz-II, Apoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:45.9
occ:1.00
O A:HOH778 3.3 32.1 1.0
NH1 A:ARG389 3.5 60.2 1.0
N A:GLY428 3.9 46.5 1.0
CE2 A:PHE425 4.2 54.1 1.0
O A:GLY428 4.4 42.7 1.0
CD2 A:LEU427 4.5 42.8 1.0
CZ A:ARG389 4.6 61.3 1.0
NE1 A:TRP429 4.6 42.6 1.0
CA A:LEU427 4.6 45.9 1.0
NH2 A:ARG389 4.6 63.4 1.0
CA A:GLY428 4.7 44.4 1.0
C A:LEU427 4.7 45.2 1.0
CE2 A:TRP429 4.8 42.5 1.0
CZ A:PHE425 4.8 55.5 1.0
NE1 A:TRP414 4.9 59.4 1.0
CD1 A:ILE419 4.9 51.9 1.0
C A:GLY428 4.9 42.0 1.0
CZ2 A:TRP429 4.9 44.8 1.0

Chlorine binding site 2 out of 2 in 8efz

Go back to Chlorine Binding Sites List in 8efz
Chlorine binding site 2 out of 2 in the Crystal Structure of Ccnikz-II, Apoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ccnikz-II, Apoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:38.3
occ:1.00
NH1 B:ARG389 3.8 49.6 1.0
N B:GLY428 3.9 49.4 1.0
CH2 B:TRP414 4.0 57.1 1.0
NH2 B:ARG389 4.1 50.5 1.0
CE2 B:PHE425 4.3 45.6 1.0
CZ B:ARG389 4.4 50.8 1.0
O B:GLY428 4.4 43.3 1.0
CA B:LEU427 4.5 43.7 1.0
NE1 B:TRP429 4.5 42.1 1.0
CZ2 B:TRP414 4.6 59.1 1.0
C B:LEU427 4.6 44.8 1.0
CA B:GLY428 4.7 45.4 1.0
CE2 B:TRP429 4.7 42.7 1.0
CD1 B:ILE419 4.8 53.2 1.0
C B:GLY428 4.9 43.4 1.0
CZ2 B:TRP429 4.9 45.9 1.0
CB B:LEU427 4.9 43.6 1.0
CZ3 B:TRP414 4.9 57.1 1.0

Reference:

P.Diep, P.J.Stogios, E.Evdokimova, P.Diep, A.Yakunin, K.Mahadevan, A.Savchenko. N/A N/A.
Page generated: Sun Jul 13 11:00:16 2025

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