Chlorine in PDB 8f28: Lysozyme Structures From Single-Entity Crystallization Method Nanoac

All present enzymatic activity of Lysozyme Structures From Single-Entity Crystallization Method Nanoac:
3.2.1.17;

The structure of Lysozyme Structures From Single-Entity Crystallization Method Nanoac, PDB code: 8f28 was solved by R.Yang, B.Sankaran, E.Ogbonna, G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.69 / 1.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.592, 78.592, 36.815, 90, 90, 90
R / Rfree (%)	14.2 / 17

The structure of Lysozyme Structures From Single-Entity Crystallization Method Nanoac also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Lysozyme Structures From Single-Entity Crystallization Method Nanoac (pdb code 8f28). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Lysozyme Structures From Single-Entity Crystallization Method Nanoac, PDB code: 8f28:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Lysozyme Structures From Single-Entity Crystallization Method Nanoac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysozyme Structures From Single-Entity Crystallization Method Nanoac within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:12.4 occ:1.00 H1 A:ACT201 2.8 27.6 0.5 H3 A:ACT201 2.9 27.6 1.0 OH A:TYR23 3.0 9.3 1.0 O A:HOH367 3.2 12.9 1.0 CH3 A:ACT201 3.3 23.0 0.6 O A:HOH434 3.6 41.3 1.0 CE2 A:TYR23 3.7 8.3 1.0 CZ A:TYR23 3.7 8.3 1.0 H2 A:ACT201 3.8 27.6 0.5 CA A:GLY104 4.1 9.0 1.0 C A:ACT201 4.5 26.9 0.8 O A:ARG21 4.6 11.7 1.0 N A:GLY104 4.6 9.7 1.0 CE1 A:TYR23 4.9 8.0 1.0 CD2 A:TYR23 4.9 8.2 1.0 OXT A:ACT201 5.0 41.4 0.8

Chlorine binding site 2 out of 2 in the Lysozyme Structures From Single-Entity Crystallization Method Nanoac


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysozyme Structures From Single-Entity Crystallization Method Nanoac within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl206 b:15.9 occ:1.00 O A:HOH424 2.8 33.6 1.0 OG A:SER24 3.0 13.4 1.0 N A:GLY26 3.1 8.7 1.0 CB A:SER24 3.5 11.6 1.0 CA A:GLY26 3.5 9.6 1.0 CA A:GLN121 3.6 14.5 1.0 CD1 A:ILE124 3.7 20.3 1.0 N A:GLN121 3.9 13.3 1.0 CB A:GLN121 4.0 21.3 1.0 N A:LEU25 4.1 9.4 1.0 CG1 A:ILE124 4.2 16.6 1.0 CG A:GLN121 4.2 28.2 1.0 C A:LEU25 4.3 8.6 1.0 C A:SER24 4.3 9.5 1.0 CG2 A:VAL120 4.3 13.8 1.0 C A:VAL120 4.3 11.4 1.0 O A:VAL120 4.3 11.3 1.0 C A:GLY26 4.5 8.0 1.0 CA A:SER24 4.5 10.6 1.0 N A:ASN27 4.6 7.8 1.0 CD A:GLN121 4.6 35.8 1.0 CA A:LEU25 4.7 9.1 1.0 O A:SER24 4.7 9.8 1.0 NE2 A:GLN121 4.8 38.3 1.0 C A:GLN121 4.8 13.5 1.0 CB A:LEU25 5.0 10.1 1.0

R.Yang, M.Kvetny, W.Brown, E.N.Ogbonna, G.Wang. A Single-Entity Method For Actively Controlled Nucleation and High-Quality Protein Crystal Synthesis. Anal.Chem. V. 95 9462 2023.
ISSN: ESSN 1520-6882
PubMed: 37243709
DOI: 10.1021/ACS.ANALCHEM.3C00175