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Chlorine in PDB 8fjz: Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Enzymatic activity of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
All present enzymatic activity of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile:
2.7.11.1;
2.7.11.1;
Protein crystallography data
The structure of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile, PDB code: 8fjz
was solved by
M.Mctigue,
E.Johnson,
C.Cronin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 81.34 / 1.90 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 57.71, 87.4, 109.071, 96.43, 99.99, 108.89 |
| R / Rfree (%) | 21.5 / 24.9 |
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
(pdb code 8fjz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile, PDB code: 8fjz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Chlorine where determined in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile, PDB code: 8fjz:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;
Chlorine binding site 1 out of 6 in 8fjz
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Chlorine Binding Sites List in 8fjz
Chlorine binding site 1 out
of 6 in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile within 5.0Å range:
|
Chlorine binding site 2 out of 6 in 8fjz
Go back to
Chlorine Binding Sites List in 8fjz
Chlorine binding site 2 out
of 6 in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile within 5.0Å range:
|
Chlorine binding site 3 out of 6 in 8fjz
Go back to
Chlorine Binding Sites List in 8fjz
Chlorine binding site 3 out
of 6 in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile within 5.0Å range:
|
Chlorine binding site 4 out of 6 in 8fjz
Go back to
Chlorine Binding Sites List in 8fjz
Chlorine binding site 4 out
of 6 in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile within 5.0Å range:
|
Chlorine binding site 5 out of 6 in 8fjz
Go back to
Chlorine Binding Sites List in 8fjz
Chlorine binding site 5 out
of 6 in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile within 5.0Å range:
|
Chlorine binding site 6 out of 6 in 8fjz
Go back to
Chlorine Binding Sites List in 8fjz
Chlorine binding site 6 out
of 6 in the Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of HPK1 Kinase Domain T165E,S171E Phosphomimetic Mutant in Complex with 3-{4-[(3R,5S)-3-Amino-5-Methylpiperidin-1-Yl]- 6-Chloro-7H-Pyrrolo[2,3-D]Pyrimidin-5-Yl}Benzonitrile within 5.0Å range:
|
Reference:
R.A.Gallego,
L.Bernier,
H.Chen,
S.Cho-Schultz,
L.Chung,
M.Collins,
M.Del Bel,
J.Elleraas,
C.Costa Jones,
C.N.Cronin,
M.Edwards,
X.Fang,
T.Fisher,
M.He,
J.Hoffman,
R.Huo,
M.Jalaie,
E.Johnson,
T.W.Johnson,
R.S.Kania,
M.Kraus,
J.Lafontaine,
P.Le,
T.Liu,
M.Maestre,
J.Matthews,
M.Mctigue,
N.Miller,
Q.Mu,
X.Qin,
S.Ren,
P.Richardson,
A.Rohner,
N.Sach,
L.Shao,
G.Smith,
R.Su,
B.Sun,
S.Timofeevski,
P.Tran,
S.Wang,
W.Wang,
R.Zhou,
J.Zhu,
S.K.Nair.
Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1. J.Med.Chem. 2023.
ISSN: ISSN 0022-2623
PubMed: 36940470
DOI: 10.1021/ACS.JMEDCHEM.2C02038
Page generated: Sun Jul 13 11:28:33 2025
ISSN: ISSN 0022-2623
PubMed: 36940470
DOI: 10.1021/ACS.JMEDCHEM.2C02038
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