Chlorine in PDB 8g82: Vancomycin Bound to D-Ala-D-Ser
Protein crystallography data
The structure of Vancomycin Bound to D-Ala-D-Ser, PDB code: 8g82
was solved by
P.J.Loll,
J.H.Park,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
26.53 /
1.20
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
30.49,
71.15,
82.44,
90,
90,
90
|
|
R / Rfree (%)
|
15.3 /
17.1
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Chlorine atom in the Vancomycin Bound to D-Ala-D-Ser
(pdb code 8g82). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 20 binding sites of Chlorine where determined in the
Vancomycin Bound to D-Ala-D-Ser, PDB code: 8g82:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 1 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl2
b:13.8
occ:0.49
|
CL
|
A:OMZ2
|
0.0
|
13.8
|
0.5
|
|
CE1
|
A:OMZ2
|
1.7
|
13.8
|
1.0
|
|
CZ
|
A:OMZ2
|
2.7
|
14.1
|
1.0
|
|
CD1
|
A:OMZ2
|
2.7
|
14.2
|
1.0
|
|
OH
|
A:OMZ2
|
2.8
|
14.7
|
1.0
|
|
C5
|
A:GHP4
|
3.4
|
13.4
|
1.0
|
|
C6
|
A:GHP4
|
3.4
|
12.8
|
1.0
|
|
O
|
B:HOH208
|
3.5
|
22.2
|
1.0
|
|
CD2
|
B:OMY6
|
3.6
|
13.4
|
1.0
|
|
O
|
B:HOH211
|
3.7
|
19.2
|
0.6
|
|
CE2
|
B:OMY6
|
3.8
|
13.6
|
1.0
|
|
O
|
A:HOH208
|
3.9
|
26.8
|
0.7
|
|
CG
|
A:OMZ2
|
4.0
|
12.7
|
1.0
|
|
CE2
|
A:OMZ2
|
4.0
|
13.8
|
1.0
|
|
O5
|
U:BGC1
|
4.3
|
14.1
|
1.0
|
|
C4
|
A:GHP4
|
4.4
|
13.0
|
1.0
|
|
O
|
B:HOH211
|
4.4
|
23.0
|
0.5
|
|
CD2
|
A:OMZ2
|
4.5
|
12.9
|
1.0
|
|
ODE
|
B:OMY6
|
4.5
|
14.3
|
1.0
|
|
C1
|
A:GHP4
|
4.5
|
12.0
|
1.0
|
|
CG
|
B:OMY6
|
4.6
|
12.5
|
1.0
|
|
O6
|
U:BGC1
|
4.7
|
23.9
|
1.0
|
|
C6
|
U:BGC1
|
4.7
|
19.9
|
1.0
|
|
O1
|
U:BGC1
|
4.9
|
13.6
|
1.0
|
|
CZ
|
B:OMY6
|
5.0
|
13.0
|
1.0
|
|
O
|
A:ASN3
|
5.0
|
14.7
|
1.0
|
|
Chlorine binding site 2 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 2 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl6
b:13.9
occ:0.75
|
CL
|
A:OMY6
|
0.0
|
13.9
|
0.8
|
|
CE1
|
A:OMY6
|
1.8
|
14.2
|
1.0
|
|
CD1
|
A:OMY6
|
2.7
|
14.3
|
1.0
|
|
CZ
|
A:OMY6
|
2.8
|
13.7
|
1.0
|
|
OCZ
|
A:OMY6
|
3.0
|
13.3
|
1.0
|
|
OG
|
K:DSN3
|
3.0
|
19.7
|
1.0
|
|
C3
|
A:GHP4
|
3.1
|
13.1
|
1.0
|
|
C2
|
A:GHP4
|
3.4
|
12.9
|
1.0
|
|
CB
|
K:DSN3
|
3.5
|
17.6
|
1.0
|
|
C3A
|
U:RER2
|
3.5
|
17.2
|
1.0
|
|
O
|
K:HOH104
|
3.6
|
39.3
|
1.0
|
|
C4
|
A:GHP4
|
3.7
|
13.0
|
1.0
|
|
O
|
K:HOH107
|
3.8
|
30.0
|
1.0
|
|
N
|
K:DSN3
|
3.9
|
17.6
|
1.0
|
|
CG
|
A:OMY6
|
4.0
|
14.4
|
1.0
|
|
CE2
|
A:OMY6
|
4.0
|
13.8
|
1.0
|
|
O
|
A:GHP4
|
4.2
|
13.6
|
1.0
|
|
C1
|
A:GHP4
|
4.2
|
12.0
|
1.0
|
|
O1
|
U:BGC1
|
4.2
|
13.6
|
1.0
|
|
C
|
K:DAL2
|
4.3
|
18.7
|
1.0
|
|
CA
|
K:DSN3
|
4.4
|
16.9
|
1.0
|
|
C5
|
U:RER2
|
4.4
|
16.1
|
1.0
|
|
C5
|
A:GHP4
|
4.4
|
13.4
|
1.0
|
|
C4
|
U:RER2
|
4.4
|
17.2
|
1.0
|
|
CD2
|
A:OMY6
|
4.5
|
14.0
|
1.0
|
|
CA
|
K:DAL2
|
4.6
|
18.6
|
1.0
|
|
C
|
A:GHP4
|
4.6
|
13.4
|
1.0
|
|
O
|
K:ACE1
|
4.6
|
18.8
|
1.0
|
|
C3
|
U:RER2
|
4.6
|
16.9
|
1.0
|
|
C6
|
A:GHP4
|
4.7
|
12.8
|
1.0
|
|
C5A
|
U:RER2
|
4.9
|
17.4
|
1.0
|
|
O
|
K:DAL2
|
4.9
|
20.9
|
1.0
|
|
Chlorine binding site 3 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 3 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl2
b:13.6
occ:0.67
|
CL
|
B:OMZ2
|
0.0
|
13.6
|
0.7
|
|
CE1
|
B:OMZ2
|
1.7
|
13.2
|
1.0
|
|
CD1
|
B:OMZ2
|
2.7
|
13.2
|
1.0
|
|
CZ
|
B:OMZ2
|
2.7
|
12.3
|
1.0
|
|
OH
|
B:OMZ2
|
2.9
|
13.4
|
1.0
|
|
C5
|
B:GHP4
|
3.5
|
12.1
|
1.0
|
|
C6
|
B:GHP4
|
3.6
|
11.9
|
1.0
|
|
CD2
|
A:OMY6
|
3.7
|
14.0
|
1.0
|
|
C3A
|
W:RER2
|
3.9
|
15.8
|
1.0
|
|
O
|
A:HOH204
|
3.9
|
37.2
|
0.8
|
|
C5
|
W:RER2
|
3.9
|
14.6
|
1.0
|
|
CE2
|
A:OMY6
|
3.9
|
13.8
|
1.0
|
|
O
|
A:HOH213
|
4.0
|
21.8
|
0.7
|
|
CG
|
B:OMZ2
|
4.0
|
11.9
|
1.0
|
|
CE2
|
B:OMZ2
|
4.0
|
12.5
|
1.0
|
|
C5A
|
W:RER2
|
4.1
|
15.6
|
1.0
|
|
C4
|
W:RER2
|
4.1
|
15.9
|
1.0
|
|
CD2
|
B:OMZ2
|
4.5
|
12.2
|
1.0
|
|
ODE
|
A:OMY6
|
4.5
|
16.6
|
1.0
|
|
C4
|
B:GHP4
|
4.6
|
12.5
|
1.0
|
|
C3
|
W:RER2
|
4.6
|
15.1
|
1.0
|
|
CG
|
A:OMY6
|
4.7
|
14.4
|
1.0
|
|
C1
|
B:GHP4
|
4.7
|
11.8
|
1.0
|
|
Chlorine binding site 4 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 4 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl6
b:13.2
occ:0.79
|
CL
|
B:OMY6
|
0.0
|
13.2
|
0.8
|
|
CE1
|
B:OMY6
|
1.8
|
12.7
|
1.0
|
|
CD1
|
B:OMY6
|
2.7
|
12.7
|
1.0
|
|
CZ
|
B:OMY6
|
2.8
|
13.0
|
1.0
|
|
OCZ
|
B:OMY6
|
3.1
|
13.5
|
1.0
|
|
OG
|
L:DSN3
|
3.1
|
14.2
|
0.3
|
|
C3
|
B:GHP4
|
3.2
|
12.7
|
1.0
|
|
C2
|
B:GHP4
|
3.5
|
12.9
|
1.0
|
|
O5
|
W:BGC1
|
3.5
|
17.0
|
1.0
|
|
C6
|
W:BGC1
|
3.5
|
22.0
|
1.0
|
|
CB
|
L:DSN3
|
3.5
|
12.2
|
0.7
|
|
N
|
L:DSN3
|
3.7
|
15.8
|
0.3
|
|
CB
|
L:DSN3
|
3.7
|
14.4
|
0.3
|
|
C
|
L:DAL2
|
3.7
|
10.5
|
0.7
|
|
N
|
L:DSN3
|
3.8
|
11.1
|
0.7
|
|
C
|
L:DAL2
|
3.8
|
16.8
|
0.3
|
|
O
|
L:HOH104
|
3.8
|
26.1
|
1.0
|
|
C4
|
B:GHP4
|
3.9
|
12.5
|
1.0
|
|
C5
|
W:BGC1
|
3.9
|
20.0
|
1.0
|
|
O6
|
W:BGC1
|
4.0
|
22.8
|
1.0
|
|
CG
|
B:OMY6
|
4.0
|
12.5
|
1.0
|
|
CA
|
L:DAL2
|
4.0
|
17.7
|
0.3
|
|
O
|
L:DAL2
|
4.0
|
10.5
|
0.7
|
|
CA
|
L:DAL2
|
4.0
|
10.7
|
0.7
|
|
CE2
|
B:OMY6
|
4.1
|
13.6
|
1.0
|
|
O
|
L:HOH102
|
4.1
|
20.1
|
1.0
|
|
O
|
B:GHP4
|
4.1
|
12.2
|
1.0
|
|
O
|
L:ACE1
|
4.2
|
18.2
|
0.3
|
|
C1
|
B:GHP4
|
4.3
|
11.8
|
1.0
|
|
CA
|
L:DSN3
|
4.3
|
10.9
|
0.7
|
|
CA
|
L:DSN3
|
4.3
|
15.0
|
0.3
|
|
C1
|
W:BGC1
|
4.4
|
15.3
|
1.0
|
|
O
|
L:ACE1
|
4.4
|
10.4
|
0.7
|
|
O
|
L:DAL2
|
4.4
|
17.1
|
0.3
|
|
O1
|
W:BGC1
|
4.4
|
13.6
|
1.0
|
|
N
|
L:DAL2
|
4.4
|
17.6
|
0.3
|
|
N
|
L:DAL2
|
4.5
|
10.8
|
0.7
|
|
C
|
L:ACE1
|
4.5
|
17.9
|
0.3
|
|
CD2
|
B:OMY6
|
4.5
|
13.4
|
1.0
|
|
C
|
B:GHP4
|
4.6
|
11.9
|
1.0
|
|
C5
|
B:GHP4
|
4.6
|
12.1
|
1.0
|
|
C
|
L:ACE1
|
4.7
|
10.4
|
0.7
|
|
OG
|
L:DSN3
|
4.7
|
14.9
|
0.7
|
|
C6
|
B:GHP4
|
4.8
|
11.9
|
1.0
|
|
C6
|
U:BGC1
|
4.9
|
19.9
|
1.0
|
|
Chlorine binding site 5 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 5 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl2
b:13.9
occ:0.49
|
CL
|
C:OMZ2
|
0.0
|
13.9
|
0.5
|
|
CE1
|
C:OMZ2
|
1.7
|
14.7
|
1.0
|
|
CD1
|
C:OMZ2
|
2.7
|
15.4
|
1.0
|
|
CZ
|
C:OMZ2
|
2.7
|
14.0
|
1.0
|
|
OH
|
C:OMZ2
|
2.8
|
14.5
|
1.0
|
|
O3
|
D:BO3101
|
3.3
|
42.5
|
1.0
|
|
C5
|
C:GHP4
|
3.4
|
14.2
|
1.0
|
|
CE2
|
D:OMY6
|
3.5
|
13.4
|
1.0
|
|
O
|
D:HOH206
|
3.5
|
22.7
|
1.0
|
|
C6
|
C:GHP4
|
3.5
|
12.7
|
1.0
|
|
CD2
|
D:OMY6
|
3.5
|
13.2
|
1.0
|
|
O
|
C:HOH212
|
3.6
|
23.7
|
1.0
|
|
O6
|
Y:BGC1
|
3.9
|
18.8
|
1.0
|
|
O5
|
Y:BGC1
|
4.0
|
14.7
|
1.0
|
|
CG
|
C:OMZ2
|
4.0
|
15.4
|
1.0
|
|
CE2
|
C:OMZ2
|
4.0
|
15.3
|
1.0
|
|
B
|
D:BO3101
|
4.1
|
14.3
|
1.0
|
|
C6
|
Y:BGC1
|
4.2
|
16.6
|
1.0
|
|
C4
|
C:GHP4
|
4.2
|
13.5
|
1.0
|
|
O2
|
D:BO3101
|
4.4
|
55.9
|
1.0
|
|
CD2
|
C:OMZ2
|
4.5
|
15.8
|
1.0
|
|
C1
|
C:GHP4
|
4.5
|
12.5
|
1.0
|
|
CZ
|
D:OMY6
|
4.6
|
13.2
|
1.0
|
|
CG
|
D:OMY6
|
4.6
|
13.4
|
1.0
|
|
O1
|
Y:BGC1
|
4.7
|
14.1
|
1.0
|
|
C5
|
Y:BGC1
|
4.8
|
15.8
|
1.0
|
|
ODE
|
D:OMY6
|
4.9
|
13.7
|
1.0
|
|
C1
|
Y:BGC1
|
5.0
|
13.8
|
1.0
|
|
O
|
C:ASN3
|
5.0
|
14.0
|
1.0
|
|
Chlorine binding site 6 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 6 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl6
b:13.8
occ:0.79
|
CL
|
C:OMY6
|
0.0
|
13.8
|
0.8
|
|
CE1
|
C:OMY6
|
1.8
|
12.8
|
1.0
|
|
CD1
|
C:OMY6
|
2.7
|
13.2
|
1.0
|
|
CZ
|
C:OMY6
|
2.8
|
13.4
|
1.0
|
|
OCZ
|
C:OMY6
|
3.0
|
14.0
|
1.0
|
|
C3
|
C:GHP4
|
3.1
|
12.9
|
1.0
|
|
OG
|
M:DSN3
|
3.3
|
18.4
|
1.0
|
|
C2
|
C:GHP4
|
3.4
|
13.1
|
1.0
|
|
O
|
M:HOH101
|
3.6
|
25.1
|
1.0
|
|
C4
|
C:GHP4
|
3.7
|
13.5
|
1.0
|
|
CB
|
M:DSN3
|
3.7
|
17.8
|
1.0
|
|
C5
|
Y:RER2
|
3.7
|
19.1
|
1.0
|
|
C3A
|
Y:RER2
|
3.7
|
19.3
|
1.0
|
|
C4
|
Y:RER2
|
3.9
|
20.0
|
1.0
|
|
C5A
|
Y:RER2
|
3.9
|
20.3
|
1.0
|
|
CG
|
C:OMY6
|
4.0
|
13.4
|
1.0
|
|
CE2
|
C:OMY6
|
4.1
|
12.8
|
1.0
|
|
O1
|
Y:BGC1
|
4.1
|
14.1
|
1.0
|
|
C1
|
C:GHP4
|
4.2
|
12.5
|
1.0
|
|
C5
|
C:GHP4
|
4.3
|
14.2
|
1.0
|
|
C3
|
Y:RER2
|
4.4
|
19.2
|
1.0
|
|
O
|
E:HOH218
|
4.5
|
26.2
|
1.0
|
|
CD2
|
C:OMY6
|
4.6
|
12.5
|
1.0
|
|
O
|
C:GHP4
|
4.6
|
12.3
|
1.0
|
|
C6
|
C:GHP4
|
4.6
|
12.7
|
1.0
|
|
C
|
C:GHP4
|
4.7
|
11.4
|
1.0
|
|
O
|
M:ACE1
|
4.8
|
18.1
|
1.0
|
|
O
|
M:HOH102
|
4.9
|
18.0
|
1.0
|
|
CA
|
M:DSN3
|
4.9
|
16.7
|
1.0
|
|
N
|
M:DSN3
|
5.0
|
17.3
|
1.0
|
|
Chlorine binding site 7 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 7 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl2
b:11.2
occ:0.54
|
CL
|
D:OMZ2
|
0.0
|
11.2
|
0.5
|
|
CE1
|
D:OMZ2
|
1.7
|
11.3
|
1.0
|
|
CD1
|
D:OMZ2
|
2.7
|
11.9
|
1.0
|
|
CZ
|
D:OMZ2
|
2.7
|
11.8
|
1.0
|
|
OH
|
D:OMZ2
|
2.9
|
12.5
|
1.0
|
|
O
|
E:HOH214
|
3.3
|
28.9
|
1.0
|
|
C6
|
D:GHP4
|
3.4
|
12.2
|
1.0
|
|
C5
|
D:GHP4
|
3.4
|
12.7
|
1.0
|
|
O
|
D:HOH219
|
3.7
|
27.5
|
0.7
|
|
CD2
|
C:OMY6
|
3.7
|
12.5
|
1.0
|
|
CE2
|
C:OMY6
|
3.8
|
12.8
|
1.0
|
|
C5A
|
a:RER2
|
3.8
|
15.1
|
1.0
|
|
C5
|
a:RER2
|
3.8
|
13.8
|
1.0
|
|
CG
|
D:OMZ2
|
4.0
|
11.3
|
1.0
|
|
CE2
|
D:OMZ2
|
4.0
|
12.1
|
1.0
|
|
C4
|
a:RER2
|
4.0
|
13.3
|
1.0
|
|
O
|
E:HOH212
|
4.1
|
26.3
|
1.0
|
|
C3A
|
a:RER2
|
4.3
|
14.4
|
1.0
|
|
C4
|
D:GHP4
|
4.4
|
12.7
|
1.0
|
|
C1
|
D:GHP4
|
4.4
|
11.6
|
1.0
|
|
CD2
|
D:OMZ2
|
4.5
|
12.1
|
1.0
|
|
O
|
D:ASN3
|
4.5
|
13.0
|
1.0
|
|
C
|
D:ASN3
|
4.7
|
11.4
|
1.0
|
|
C3
|
a:RER2
|
4.8
|
12.9
|
1.0
|
|
CG
|
C:OMY6
|
4.9
|
13.4
|
1.0
|
|
O
|
F:OMZ2
|
4.9
|
12.7
|
1.0
|
|
ODE
|
C:OMY6
|
4.9
|
13.7
|
1.0
|
|
O
|
C:HOH217
|
4.9
|
29.8
|
0.9
|
|
O1
|
a:BGC1
|
4.9
|
12.9
|
1.0
|
|
CZ
|
C:OMY6
|
5.0
|
13.4
|
1.0
|
|
N
|
D:GHP4
|
5.0
|
10.8
|
1.0
|
|
CD1
|
F:OMZ2
|
5.0
|
12.4
|
1.0
|
|
Chlorine binding site 8 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 8 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl6
b:13.1
occ:0.88
|
CL
|
D:OMY6
|
0.0
|
13.1
|
0.9
|
|
CE1
|
D:OMY6
|
1.7
|
13.1
|
1.0
|
|
CD1
|
D:OMY6
|
2.7
|
12.9
|
1.0
|
|
CZ
|
D:OMY6
|
2.8
|
13.2
|
1.0
|
|
OG
|
N:DSN3
|
3.0
|
16.7
|
1.0
|
|
C3
|
D:GHP4
|
3.1
|
12.6
|
1.0
|
|
OCZ
|
D:OMY6
|
3.1
|
13.0
|
1.0
|
|
C2
|
D:GHP4
|
3.3
|
12.7
|
1.0
|
|
O5
|
a:BGC1
|
3.4
|
14.3
|
1.0
|
|
CB
|
N:DSN3
|
3.5
|
14.2
|
1.0
|
|
C4
|
D:GHP4
|
3.6
|
12.7
|
1.0
|
|
O
|
N:HOH104
|
3.6
|
29.3
|
1.0
|
|
C6
|
a:BGC1
|
3.6
|
18.4
|
1.0
|
|
C5
|
a:BGC1
|
3.8
|
16.4
|
1.0
|
|
N
|
N:DSN3
|
3.8
|
13.7
|
1.0
|
|
O
|
D:HOH218
|
3.9
|
31.4
|
1.0
|
|
CG
|
D:OMY6
|
4.0
|
13.4
|
1.0
|
|
C1
|
D:GHP4
|
4.1
|
11.6
|
1.0
|
|
CE2
|
D:OMY6
|
4.1
|
13.4
|
1.0
|
|
C1
|
a:BGC1
|
4.1
|
13.3
|
1.0
|
|
O1
|
D:BO3101
|
4.2
|
39.0
|
1.0
|
|
C
|
N:DAL2
|
4.2
|
13.7
|
1.0
|
|
C5
|
D:GHP4
|
4.2
|
12.7
|
1.0
|
|
O1
|
a:BGC1
|
4.2
|
12.9
|
1.0
|
|
O
|
D:GHP4
|
4.3
|
11.3
|
1.0
|
|
CA
|
N:DSN3
|
4.3
|
13.5
|
1.0
|
|
O6
|
a:BGC1
|
4.4
|
20.8
|
1.0
|
|
O
|
N:ACE1
|
4.4
|
12.4
|
1.0
|
|
CA
|
N:DAL2
|
4.5
|
13.5
|
1.0
|
|
C6
|
D:GHP4
|
4.5
|
12.2
|
1.0
|
|
CD2
|
D:OMY6
|
4.5
|
13.2
|
1.0
|
|
C
|
D:GHP4
|
4.5
|
10.9
|
1.0
|
|
O
|
N:DAL2
|
4.8
|
16.5
|
1.0
|
|
C
|
N:ACE1
|
4.8
|
13.4
|
1.0
|
|
N
|
N:DAL2
|
4.9
|
14.4
|
1.0
|
|
CA
|
D:GHP4
|
5.0
|
11.2
|
1.0
|
|
B
|
D:BO3101
|
5.0
|
14.3
|
1.0
|
|
Chlorine binding site 9 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 9 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl2
b:16.1
occ:0.56
|
CL
|
E:OMZ2
|
0.0
|
16.1
|
0.6
|
|
CE1
|
E:OMZ2
|
1.7
|
15.6
|
1.0
|
|
CD1
|
E:OMZ2
|
2.7
|
16.6
|
1.0
|
|
CZ
|
E:OMZ2
|
2.7
|
16.5
|
1.0
|
|
OH
|
E:OMZ2
|
2.8
|
16.7
|
1.0
|
|
C5
|
E:GHP4
|
3.4
|
14.9
|
1.0
|
|
C6
|
E:GHP4
|
3.4
|
14.5
|
1.0
|
|
O
|
E:HOH211
|
3.6
|
27.1
|
0.5
|
|
O
|
E:HOH213
|
3.7
|
32.6
|
1.0
|
|
CD2
|
F:OMY6
|
3.8
|
14.4
|
1.0
|
|
CE2
|
F:OMY6
|
3.8
|
13.8
|
1.0
|
|
CG
|
E:OMZ2
|
4.0
|
16.1
|
1.0
|
|
CE2
|
E:OMZ2
|
4.0
|
17.1
|
1.0
|
|
O6
|
c:BGC1
|
4.2
|
23.2
|
1.0
|
|
O5
|
c:BGC1
|
4.2
|
15.6
|
1.0
|
|
C4
|
E:GHP4
|
4.4
|
13.8
|
1.0
|
|
O
|
E:HOH211
|
4.4
|
29.5
|
0.6
|
|
CD2
|
E:OMZ2
|
4.5
|
17.1
|
1.0
|
|
C6
|
c:BGC1
|
4.5
|
20.6
|
1.0
|
|
C1
|
E:GHP4
|
4.5
|
13.2
|
1.0
|
|
O
|
E:ASN3
|
4.7
|
14.4
|
1.0
|
|
C
|
E:ASN3
|
4.9
|
13.1
|
1.0
|
|
O
|
F:HOH114
|
4.9
|
41.2
|
1.0
|
|
O1
|
c:BGC1
|
4.9
|
14.7
|
1.0
|
|
CG
|
F:OMY6
|
4.9
|
13.8
|
1.0
|
|
CZ
|
F:OMY6
|
4.9
|
14.0
|
1.0
|
|
Chlorine binding site 10 out
of 20 in 8g82
Go back to
Chlorine Binding Sites List in 8g82
Chlorine binding site 10 out
of 20 in the Vancomycin Bound to D-Ala-D-Ser
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Vancomycin Bound to D-Ala-D-Ser within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl6
b:15.1
occ:0.87
|
CL
|
E:OMY6
|
0.0
|
15.1
|
0.9
|
|
CE1
|
E:OMY6
|
1.8
|
14.1
|
1.0
|
|
CD1
|
E:OMY6
|
2.7
|
14.2
|
1.0
|
|
CZ
|
E:OMY6
|
2.8
|
13.9
|
1.0
|
|
OCZ
|
E:OMY6
|
3.0
|
14.2
|
1.0
|
|
C3
|
E:GHP4
|
3.1
|
13.5
|
1.0
|
|
OG
|
O:DSN3
|
3.2
|
22.2
|
1.0
|
|
C2
|
E:GHP4
|
3.5
|
13.8
|
1.0
|
|
O
|
O:HOH204
|
3.6
|
31.9
|
1.0
|
|
C4
|
E:GHP4
|
3.7
|
13.8
|
1.0
|
|
CB
|
O:DSN3
|
3.7
|
19.7
|
1.0
|
|
C5
|
c:RER2
|
3.7
|
19.1
|
1.0
|
|
C3A
|
c:RER2
|
3.8
|
17.8
|
1.0
|
|
O
|
O:HOH207
|
3.9
|
29.3
|
1.0
|
|
C5A
|
c:RER2
|
3.9
|
20.2
|
1.0
|
|
C4
|
c:RER2
|
4.0
|
19.3
|
1.0
|
|
CG
|
E:OMY6
|
4.0
|
12.9
|
1.0
|
|
CE2
|
E:OMY6
|
4.1
|
13.8
|
1.0
|
|
O1
|
c:BGC1
|
4.1
|
14.7
|
1.0
|
|
C1
|
E:GHP4
|
4.2
|
13.2
|
1.0
|
|
N
|
O:DSN3
|
4.3
|
17.3
|
1.0
|
|
C5
|
E:GHP4
|
4.3
|
14.9
|
1.0
|
|
O
|
E:GHP4
|
4.5
|
14.2
|
1.0
|
|
CD2
|
E:OMY6
|
4.5
|
13.3
|
1.0
|
|
C3
|
c:RER2
|
4.5
|
18.1
|
1.0
|
|
C6
|
E:GHP4
|
4.6
|
14.5
|
1.0
|
|
CA
|
O:DSN3
|
4.6
|
17.6
|
1.0
|
|
O
|
O:ACE1
|
4.7
|
17.0
|
1.0
|
|
O
|
C:HOH215
|
4.7
|
25.9
|
1.0
|
|
C
|
E:GHP4
|
4.8
|
12.7
|
1.0
|
|
C
|
O:DAL2
|
4.8
|
18.6
|
1.0
|
|
Reference:
J.H.Park,
P.J.Loll.
Structure of Vancomycin Bound to D-Ala-D-Ser To Be Published.
Page generated: Sun Jul 13 11:45:42 2025
|
