Chlorine in PDB 8gmv: Crystal Structure of Lysozyme

All present enzymatic activity of Crystal Structure of Lysozyme:
3.2.1.17;

The structure of Crystal Structure of Lysozyme, PDB code: 8gmv was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.97 / 2.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.441, 79.441, 37.113, 90, 90, 90
R / Rfree (%)	18.4 / 23.4

The structure of Crystal Structure of Lysozyme also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme (pdb code 8gmv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme, PDB code: 8gmv:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:14.2 occ:1.00 OH A:TYR41 3.1 10.2 1.0 O A:HOH353 3.2 12.4 1.0 O A:HOH371 3.4 36.4 1.0 CE2 A:TYR41 3.7 12.7 1.0 CZ A:TYR41 3.7 11.3 1.0 CA A:GLY122 4.1 13.3 1.0 O A:ARG39 4.6 16.4 1.0 N A:GLY122 4.7 11.0 1.0 O A:HOH336 4.8 22.9 1.0 CD2 A:TYR41 4.9 9.4 1.0 CE1 A:TYR41 4.9 7.5 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:22.8 occ:1.00 OG A:SER42 3.0 13.9 1.0 N A:GLY44 3.1 10.2 1.0 CG A:GLN139 3.3 40.1 1.0 CB A:SER42 3.4 17.8 1.0 CA A:GLY44 3.5 11.3 1.0 CA A:GLN139 3.7 22.8 1.0 CD1 A:ILE142 3.8 19.1 1.0 CB A:GLN139 3.9 33.0 1.0 N A:LEU43 4.1 15.8 1.0 N A:GLN139 4.1 18.8 1.0 CD A:GLN139 4.2 49.6 1.0 C A:LEU43 4.3 13.1 1.0 C A:SER42 4.3 14.5 1.0 CG1 A:ILE142 4.3 16.5 1.0 CG2 A:VAL138 4.4 14.8 1.0 O A:VAL138 4.5 13.0 1.0 CA A:SER42 4.5 11.2 1.0 C A:VAL138 4.5 17.3 1.0 NE2 A:GLN139 4.5 62.8 1.0 C A:GLY44 4.6 13.0 1.0 CA A:LEU43 4.6 12.7 1.0 N A:ASN45 4.8 12.3 1.0 O A:SER42 4.8 11.5 1.0 C A:GLN139 4.9 19.4 1.0 CB A:LEU43 4.9 13.5 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:20.4 occ:1.00 O A:HOH309 2.9 8.4 1.0 N A:THR87 3.0 18.5 1.0 O A:HOH332 3.2 29.6 1.0 O A:HOH378 3.3 30.7 1.0 O A:THR87 3.3 16.6 1.0 N A:ARG86 3.4 23.9 1.0 C A:GLY85 3.5 24.7 1.0 CA A:GLY85 3.6 15.8 1.0 OG A:SER90 3.6 15.1 1.0 C A:THR87 3.7 19.6 1.0 N A:GLY85 3.7 19.3 1.0 CA A:THR87 3.8 17.6 1.0 OD1 A:ASN83 3.8 12.5 1.0 C A:ARG86 4.0 22.8 1.0 CA A:ARG86 4.1 17.8 1.0 OD1 A:ASP84 4.1 13.0 1.0 O A:GLY85 4.1 24.5 1.0 CB A:THR87 4.2 17.7 1.0 O A:HOH352 4.2 14.6 1.0 N A:PRO88 4.5 15.8 1.0 OG1 A:THR87 4.7 17.7 1.0 NA A:NA201 4.7 13.5 1.0 C A:ASP84 4.7 14.4 1.0 CB A:SER90 4.8 13.7 1.0 O A:HOH339 4.9 20.1 0.5 N A:ASP84 4.9 12.8 1.0

K.H.Nam, K.H.Nam. N/A N/A.