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Chlorine in PDB 8h6h: Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum (pdb code 8h6h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum, PDB code: 8h6h:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8h6h

Go back to Chlorine Binding Sites List in 8h6h
Chlorine binding site 1 out of 4 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:102.2
occ:1.00
HD21 A:ASN751 2.2 79.1 1.0
HE A:ARG717 2.5 79.6 1.0
HD21 A:ASN623 2.6 89.2 1.0
HH21 A:ARG717 2.7 79.3 1.0
HB2 A:ASN623 2.8 89.2 1.0
HB2 A:ASN751 2.8 76.5 1.0
ND2 A:ASN751 3.0 83.4 1.0
HD2 A:PHE749 3.2 78.0 1.0
ND2 A:ASN623 3.3 88.9 1.0
HZ3 A:TRP622 3.3 81.5 1.0
NE A:ARG717 3.3 83.6 1.0
NH2 A:ARG717 3.4 81.9 1.0
HE3 A:TRP622 3.5 81.7 1.0
HD22 A:ASN751 3.6 78.3 1.0
CB A:ASN751 3.6 70.3 1.0
CB A:ASN623 3.7 88.1 1.0
CG A:ASN751 3.8 76.7 1.0
HD22 A:ASN623 3.8 88.9 1.0
HB3 A:ASN751 3.9 76.8 1.0
CZ A:ARG717 3.9 81.7 1.0
HD11 A:LEU786 3.9 81.6 1.0
CG A:ASN623 3.9 86.7 1.0
CZ3 A:TRP622 3.9 76.7 1.0
HB3 A:PHE749 3.9 76.8 1.0
CE3 A:TRP622 4.0 78.2 1.0
CD2 A:PHE749 4.0 78.3 1.0
HB3 A:ASN623 4.0 88.8 1.0
HH22 A:ARG717 4.1 79.8 1.0
H A:ASN751 4.2 76.6 1.0
HD21 A:LEU786 4.3 81.3 1.0
HD3 A:ARG717 4.3 78.5 1.0
HG A:LEU786 4.4 81.1 1.0
CD A:ARG717 4.4 76.3 1.0
HD12 A:LEU626 4.5 93.2 1.0
SD A:MET666 4.5 103.3 1.0
HE2 A:PHE749 4.6 76.5 1.0
CD1 A:LEU786 4.7 86.0 1.0
H A:ASN623 4.7 88.6 1.0
CA A:ASN623 4.8 87.7 1.0
CE2 A:PHE749 4.8 74.3 1.0
HD11 A:LEU626 4.8 92.5 1.0
CB A:PHE749 4.8 74.5 1.0
CA A:ASN751 4.8 69.8 1.0
HA A:ASN623 4.9 88.8 1.0
N A:ASN751 4.9 74.8 1.0
CG A:PHE749 4.9 74.3 1.0
CG A:LEU786 4.9 81.2 1.0
HD12 A:LEU786 4.9 81.8 1.0
HG2 A:ARG717 4.9 77.9 1.0
N A:ASN623 5.0 88.5 1.0

Chlorine binding site 2 out of 4 in 8h6h

Go back to Chlorine Binding Sites List in 8h6h
Chlorine binding site 2 out of 4 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1002

b:30.0
occ:1.00
H A:LEU887 2.4 77.9 1.0
H A:THR491 2.5 78.1 1.0
H A:GLN490 2.5 75.0 1.0
HA3 A:GLY489 2.8 74.8 1.0
N A:GLN490 3.0 74.5 1.0
HB2 A:PRO886 3.1 78.4 1.0
HA A:PRO886 3.1 78.0 1.0
N A:LEU887 3.2 78.4 1.0
HB3 A:PRO886 3.2 79.0 1.0
H A:GLN492 3.3 89.5 1.0
HB3 A:GLN490 3.3 74.3 1.0
N A:THR491 3.3 79.3 1.0
CB A:PRO886 3.4 77.9 1.0
HB2 A:LEU887 3.5 77.9 1.0
CA A:GLY489 3.6 67.9 1.0
OG1 A:THR491 3.6 80.7 1.0
CA A:PRO886 3.6 76.4 1.0
C A:GLY489 3.6 75.5 1.0
HB2 A:GLN492 3.7 89.6 1.0
HG A:LEU887 3.7 77.6 1.0
NE2 A:HIS140 3.8 69.8 1.0
HD13 A:LEU887 3.8 77.8 1.0
CA A:GLN490 3.9 67.6 1.0
N A:GLN492 3.9 87.0 1.0
C A:PRO886 3.9 77.9 1.0
HA2 A:GLY489 3.9 75.0 1.0
CD2 A:HIS140 4.0 68.3 1.0
CB A:GLN490 4.0 67.7 1.0
C A:GLN490 4.1 75.6 1.0
HG1 A:THR491 4.1 77.7 1.0
CB A:LEU887 4.1 75.5 1.0
H A:LEU888 4.2 83.0 1.0
CA A:THR491 4.2 70.1 1.0
CA A:LEU887 4.2 78.2 1.0
HB3 A:GLN492 4.3 90.2 1.0
CG A:LEU887 4.3 74.8 1.0
CB A:GLN492 4.4 87.2 1.0
C A:THR491 4.4 76.7 1.0
HB2 A:GLN490 4.4 74.4 1.0
CB A:THR491 4.5 73.4 1.0
CD1 A:LEU887 4.5 75.0 1.0
O A:GLY489 4.6 80.0 1.0
N A:GLY489 4.7 73.2 1.0
HG22 A:THR491 4.7 77.3 1.0
HA A:GLN490 4.8 74.3 1.0
CA A:GLN492 4.8 86.6 1.0
N A:LEU888 4.8 82.6 1.0
HG A:LEU888 4.9 83.5 1.0
CG A:PRO886 4.9 77.0 1.0
HA A:LEU887 5.0 78.7 1.0
N A:PRO886 5.0 79.1 1.0
HD12 A:LEU887 5.0 77.5 1.0
HB3 A:LEU887 5.0 78.1 1.0

Chlorine binding site 3 out of 4 in 8h6h

Go back to Chlorine Binding Sites List in 8h6h
Chlorine binding site 3 out of 4 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1001

b:101.7
occ:1.00
HD21 B:ASN751 2.1 88.3 1.0
HE B:ARG717 2.6 86.3 1.0
HD21 B:ASN623 2.6 98.5 1.0
HH22 B:ARG717 2.6 86.6 1.0
HB2 B:ASN623 2.8 98.5 1.0
HB2 B:ASN751 2.8 86.8 1.0
ND2 B:ASN751 3.0 89.6 1.0
HD2 B:PHE749 3.2 85.2 1.0
ND2 B:ASN623 3.3 98.8 1.0
HZ3 B:TRP622 3.3 90.6 1.0
NE B:ARG717 3.4 90.2 1.0
NH2 B:ARG717 3.4 87.4 1.0
HE3 B:TRP622 3.5 90.7 1.0
HD22 B:ASN751 3.5 87.3 1.0
CB B:ASN751 3.6 83.1 1.0
CB B:ASN623 3.7 98.3 1.0
CG B:ASN751 3.8 86.6 1.0
HD22 B:ASN623 3.8 98.4 1.0
CZ B:ARG717 3.9 85.1 1.0
HB3 B:ASN751 3.9 86.5 1.0
HD11 B:LEU786 3.9 91.3 1.0
HB3 B:PHE749 3.9 84.6 1.0
CG B:ASN623 3.9 95.2 1.0
CZ3 B:TRP622 3.9 86.3 1.0
CE3 B:TRP622 4.0 88.4 1.0
HB3 B:ASN623 4.1 98.3 1.0
CD2 B:PHE749 4.1 86.2 1.0
HH21 B:ARG717 4.1 86.5 1.0
H B:ASN751 4.2 86.3 1.0
HD21 B:LEU786 4.3 91.2 1.0
HD3 B:ARG717 4.4 85.5 1.0
HG B:LEU786 4.4 91.0 1.0
HD13 B:LEU626 4.4 102.4 1.0
SD B:MET666 4.5 108.3 1.0
CD B:ARG717 4.5 87.2 1.0
HE2 B:PHE749 4.6 83.6 1.0
H B:ASN623 4.7 97.5 1.0
CD1 B:LEU786 4.7 95.5 1.0
HD12 B:LEU626 4.8 102.0 1.0
CA B:ASN623 4.8 96.3 1.0
CB B:PHE749 4.8 81.7 1.0
CE2 B:PHE749 4.8 81.7 1.0
CA B:ASN751 4.8 81.0 1.0
N B:ASN751 4.9 85.6 1.0
HG2 B:ARG717 4.9 85.3 1.0
HA B:ASN623 4.9 98.0 1.0
CG B:PHE749 4.9 82.1 1.0
CG B:LEU786 4.9 90.2 1.0
HD12 B:LEU786 5.0 91.9 1.0
N B:ASN623 5.0 95.7 1.0
OD1 B:ASN751 5.0 94.7 1.0

Chlorine binding site 4 out of 4 in 8h6h

Go back to Chlorine Binding Sites List in 8h6h
Chlorine binding site 4 out of 4 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1002

b:30.0
occ:1.00
H B:GLN490 2.3 81.1 1.0
H B:LEU887 2.4 83.7 1.0
H B:THR491 2.5 84.2 1.0
HA3 B:GLY489 2.8 81.6 1.0
N B:GLN490 2.8 81.5 1.0
HB3 B:GLN490 3.0 80.7 1.0
HE2 B:HIS140 3.2 78.7 1.0
N B:LEU887 3.3 82.4 1.0
HD2 B:HIS140 3.3 77.8 1.0
HB2 B:LEU887 3.3 82.9 1.0
HA B:PRO886 3.3 85.8 1.0
N B:THR491 3.3 84.4 1.0
HD13 B:LEU887 3.4 83.8 1.0
HB2 B:PRO886 3.4 85.9 1.0
CA B:GLY489 3.5 75.9 1.0
C B:GLY489 3.5 82.5 1.0
HG B:LEU887 3.5 83.7 1.0
H B:GLN492 3.5 95.2 1.0
HB3 B:PRO886 3.6 85.8 1.0
CA B:GLN490 3.7 71.9 1.0
NE2 B:HIS140 3.7 82.1 1.0
CB B:GLN490 3.7 73.8 1.0
CB B:PRO886 3.8 84.0 1.0
HA2 B:GLY489 3.8 82.3 1.0
CD2 B:HIS140 3.8 78.4 1.0
OG1 B:THR491 3.8 86.0 1.0
CA B:PRO886 3.8 84.9 1.0
CB B:LEU887 3.9 79.9 1.0
C B:GLN490 4.0 78.5 1.0
HB2 B:GLN492 4.0 95.6 1.0
CG B:LEU887 4.0 81.6 1.0
C B:PRO886 4.0 83.7 1.0
HB2 B:GLN490 4.1 80.7 1.0
N B:GLN492 4.1 92.3 1.0
CD1 B:LEU887 4.1 81.4 1.0
CA B:LEU887 4.2 82.2 1.0
HG1 B:THR491 4.3 83.6 1.0
H B:LEU888 4.3 89.2 1.0
CA B:THR491 4.4 75.8 1.0
HB3 B:GLN492 4.4 95.7 1.0
HA B:GLN490 4.5 80.8 1.0
O B:GLY489 4.6 84.0 1.0
HD12 B:LEU887 4.6 83.1 1.0
C B:THR491 4.6 80.6 1.0
CB B:GLN492 4.6 93.1 1.0
CB B:THR491 4.7 78.3 1.0
N B:GLY489 4.7 78.5 1.0
HG23 B:THR491 4.7 83.6 1.0
HB3 B:LEU887 4.8 83.9 1.0
HD11 B:LEU887 4.9 83.1 1.0
HA B:LEU887 4.9 84.5 1.0
HG B:LEU888 4.9 89.2 1.0
N B:LEU888 4.9 88.1 1.0

Reference:

T.Kuga, N.Sunagawa, K.Igarashi. Structure and Dynamics of Cellodextrin Phosphorylase From Clostridium Thermocellum Determine Chain Length and Crystalline Packing of Highly Ordered Cellulose II Synthesized in Vitro To Be Published.
Page generated: Sun Jul 13 12:01:09 2025

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