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Chlorine in PDB 8hql: Crystal Structure of Mouse SNX25 Px Domain

Protein crystallography data

The structure of Crystal Structure of Mouse SNX25 Px Domain, PDB code: 8hql was solved by Z.Yu, J.Xu, J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.00 / 2.40
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.68, 92.68, 449.521, 90, 90, 120
R / Rfree (%) 19.9 / 24.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mouse SNX25 Px Domain (pdb code 8hql). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Mouse SNX25 Px Domain, PDB code: 8hql:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 8hql

Go back to Chlorine Binding Sites List in 8hql
Chlorine binding site 1 out of 5 in the Crystal Structure of Mouse SNX25 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl710

b:94.4
occ:1.00
C A:LYS584 3.0 65.8 1.0
O A:LYS584 3.1 81.5 1.0
N A:SER585 3.3 58.6 1.0
N A:LYS584 3.3 71.0 1.0
CA A:LYS584 3.6 66.4 1.0
O A:LEU581 3.8 100.9 1.0
CA A:SER585 3.8 56.7 1.0
CB A:LYS584 4.1 74.0 1.0
N A:PHE583 4.2 74.7 1.0
C A:PHE583 4.3 78.7 1.0
CB A:SER585 4.5 53.4 1.0
CA A:PHE583 4.6 78.0 1.0
C A:PRO582 4.7 88.4 1.0
O A:SER579 4.7 84.2 1.0

Chlorine binding site 2 out of 5 in 8hql

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Chlorine binding site 2 out of 5 in the Crystal Structure of Mouse SNX25 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl707

b:100.6
occ:1.00
CG B:ARG552 3.3 51.6 1.0
CD B:ARG552 3.4 66.4 1.0
NH1 B:ARG552 3.5 74.8 1.0
O B:HOH803 3.7 46.9 1.0
CG1 A:VAL542 3.8 65.1 1.0
SG B:CYS529 3.8 53.9 1.0
CG2 B:THR520 4.0 55.7 1.0
NE B:ARG552 4.3 76.0 1.0
CZ B:ARG552 4.4 84.6 1.0
CB A:VAL542 4.4 60.8 1.0
OG1 B:THR520 4.6 79.8 1.0
CB B:THR520 4.8 60.8 1.0
CB B:ARG552 4.8 45.7 1.0
O A:VAL542 4.8 56.2 1.0
CB B:CYS529 4.9 55.2 1.0
OE1 B:GLU555 4.9 35.7 1.0

Chlorine binding site 3 out of 5 in 8hql

Go back to Chlorine Binding Sites List in 8hql
Chlorine binding site 3 out of 5 in the Crystal Structure of Mouse SNX25 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl707

b:89.8
occ:1.00
C24 E:1PE701 3.2 86.0 1.0
C23 E:1PE701 3.3 85.2 1.0
C14 C:1PE701 3.3 84.4 1.0
C25 C:1PE701 3.5 79.4 1.0
OH4 E:1PE701 3.5 83.9 1.0
C24 C:1PE701 3.7 76.5 1.0
OH5 C:1PE701 3.7 82.6 1.0
C13 E:1PE701 4.0 76.5 1.0
O C:ASN546 4.0 35.0 1.0
O E:ASN546 4.1 32.3 1.0
CB C:ASN546 4.3 39.4 1.0
CB E:ASN546 4.4 34.9 1.0
OH3 E:1PE701 4.4 85.1 1.0
C C:ASN546 4.4 38.3 1.0
C E:ASN546 4.6 38.1 1.0
O E:HOH804 4.6 36.8 1.0
C14 E:1PE701 4.7 80.0 1.0
CA C:TRP547 4.7 35.3 1.0
O C:HOH804 4.7 32.7 1.0
N C:TRP547 4.8 35.1 1.0
C15 C:1PE701 4.8 77.7 1.0
CA E:TRP547 4.9 37.5 1.0
N E:TRP547 4.9 39.9 1.0

Chlorine binding site 4 out of 5 in 8hql

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Chlorine binding site 4 out of 5 in the Crystal Structure of Mouse SNX25 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl706

b:103.9
occ:0.50
OH4 D:1PE701 3.3 62.1 1.0
C23 D:1PE701 4.1 65.7 1.0
O D:ASN546 4.1 31.6 1.0
C13 D:1PE701 4.1 70.0 1.0
CB D:ASN546 4.3 33.9 1.0
C D:ASN546 4.5 31.9 1.0
O D:HOH806 4.7 30.8 1.0
CA D:TRP547 4.8 28.1 1.0
N D:TRP547 4.8 28.8 1.0

Chlorine binding site 5 out of 5 in 8hql

Go back to Chlorine Binding Sites List in 8hql
Chlorine binding site 5 out of 5 in the Crystal Structure of Mouse SNX25 Px Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl706

b:89.1
occ:1.00
O E:PHE583 2.6 64.4 1.0
OG E:SER579 2.7 87.6 1.0
CA E:LYS584 3.2 114.0 1.0
C E:PHE583 3.3 99.2 1.0
N E:LYS584 3.5 107.9 1.0
O E:LEU581 3.8 94.9 1.0
CB E:LYS584 3.8 101.8 1.0
O E:PRO582 3.9 94.1 1.0
CB E:SER579 4.0 86.6 1.0
C E:LYS584 4.3 107.7 1.0
C E:LEU581 4.4 97.5 1.0
C E:PRO582 4.5 119.6 1.0
N E:SER585 4.6 77.9 1.0
CB E:LEU581 4.6 93.6 1.0
CA E:PHE583 4.6 89.1 1.0
N E:PHE583 4.9 108.0 1.0
CA E:LEU581 4.9 99.9 1.0
N E:LEU581 4.9 91.9 1.0

Reference:

Z.Yu, J.Xu, J.Liu. Crystal Structure of Mouse SNX25 Px Domain To Be Published.
Page generated: Sun Jul 13 12:06:38 2025

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