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Chlorine in PDB 8ill: Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6

Protein crystallography data

The structure of Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6, PDB code: 8ill was solved by H.Ago, R.Ando, M.Hirano, S.Shimozono, A.Miyawaki, M.Yamamoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.00 / 2.20
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 133.999, 133.999, 59.023, 90, 90, 120
R / Rfree (%) 15.5 / 19

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6 (pdb code 8ill). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6, PDB code: 8ill:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8ill

Go back to Chlorine Binding Sites List in 8ill
Chlorine binding site 1 out of 2 in the Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:11.1
occ:1.00
O A:HOH432 3.0 6.2 1.0
NZ A:LYS61 3.2 7.6 1.0
NH2 A:ARG86 3.4 5.6 1.0
NZ A:LYS192 3.5 6.1 1.0
CE A:LYS61 3.8 8.0 1.0
OG1 A:THR172 3.8 8.6 1.0
CB2 A:CR258 3.9 8.1 1.0
CB A:CYS150 3.9 7.9 1.0
NE2 A:GLN170 3.9 6.5 1.0
CD2 A:CR258 4.0 8.7 1.0
CG1 A:VAL139 4.0 4.7 1.0
CB A:THR172 4.1 9.1 1.0
O2 A:CR258 4.3 10.2 1.0
SG A:CYS150 4.3 9.1 1.0
CG2 A:CR258 4.5 9.2 1.0
CG2 A:THR172 4.5 3.8 1.0
CZ A:ARG86 4.6 6.3 1.0
CE A:LYS192 4.7 6.9 1.0
CA2 A:CR258 4.8 10.0 1.0
OH A:TYR84 4.9 8.9 1.0
NE A:ARG86 5.0 6.4 1.0
C2 A:CR258 5.0 5.2 1.0

Chlorine binding site 2 out of 2 in 8ill

Go back to Chlorine Binding Sites List in 8ill
Chlorine binding site 2 out of 2 in the Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein at PH5.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:9.7
occ:1.00
O B:HOH456 3.0 6.1 1.0
NZ B:LYS61 3.2 5.5 1.0
NH2 B:ARG86 3.4 8.0 1.0
NZ B:LYS192 3.5 6.6 1.0
CE B:LYS61 3.7 6.0 1.0
OG1 B:THR172 3.8 9.4 1.0
CB B:CYS150 3.9 7.1 1.0
NE2 B:GLN170 3.9 5.0 1.0
CB2 B:CR258 3.9 9.0 1.0
CD2 B:CR258 4.0 6.8 1.0
CG1 B:VAL139 4.0 8.5 1.0
CB B:THR172 4.1 7.8 1.0
SG B:CYS150 4.3 10.5 1.0
O2 B:CR258 4.4 7.6 1.0
CG2 B:CR258 4.5 9.5 1.0
CG2 B:THR172 4.5 6.5 1.0
CZ B:ARG86 4.5 14.3 1.0
CE B:LYS192 4.6 6.0 1.0
OH B:TYR84 4.9 9.9 1.0
CA2 B:CR258 4.9 7.5 1.0
NE B:ARG86 4.9 9.6 1.0

Reference:

R.Ando, H.Ago, M.Hirano, S.Shimozono, M.Yamamoto, A.Miyawaki. Crystal Structure of A Highly Photostable and Bright Green Fluorescent Protein To Be Published.
Page generated: Sun Jul 13 12:15:17 2025

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