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Chlorine in PDB 8p2q: Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh, PDB code: 8p2q was solved by Z.Alsalman, E.Girard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.57 / 1.69
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.143, 77.143, 37.695, 90, 90, 90
R / Rfree (%) 15.9 / 19.5

Other elements in 8p2q:

The structure of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh also contains other interesting chemical elements:

Sodium (Na) 1 atom
Terbium (Tb) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh (pdb code 8p2q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh, PDB code: 8p2q:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 8p2q

Go back to Chlorine Binding Sites List in 8p2q
Chlorine binding site 1 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:24.8
occ:1.00
H A:GLY26 2.4 18.1 1.0
HA A:GLN121 2.8 25.8 1.0
HB2 A:SER24 2.9 20.7 1.0
HA3 A:GLY26 3.0 20.8 1.0
OG A:SER24 3.1 17.9 1.0
O A:HOH411 3.1 39.3 1.0
N A:GLY26 3.2 15.1 1.0
HD13 A:ILE124 3.4 41.2 1.0
CB A:SER24 3.5 17.3 1.0
HB2 A:GLN121 3.5 31.9 1.0
HG23 A:VAL120 3.5 28.2 1.0
HD11 A:ILE124 3.6 41.2 1.0
CA A:GLN121 3.6 21.5 1.0
CA A:GLY26 3.6 17.3 1.0
HG2 A:GLN121 3.8 39.4 1.0
HG A:SER24 3.8 21.5 1.0
CD1 A:ILE124 3.9 34.3 1.0
CB A:GLN121 3.9 26.6 1.0
H A:LEU25 4.0 20.7 1.0
N A:GLN121 4.0 19.1 1.0
HG12 A:ILE124 4.0 25.6 1.0
N A:LEU25 4.1 17.2 1.0
HB3 A:SER24 4.1 20.7 1.0
H A:ASN27 4.2 17.5 1.0
HB3 A:LEU25 4.3 20.0 1.0
H A:GLN121 4.3 22.9 1.0
HA2 A:GLY26 4.3 20.8 1.0
C A:SER24 4.3 14.1 1.0
CG A:GLN121 4.3 32.8 1.0
C A:LEU25 4.3 15.5 1.0
C A:VAL120 4.4 17.9 1.0
CG2 A:VAL120 4.4 23.5 1.0
O A:VAL120 4.4 19.8 1.0
HG21 A:VAL120 4.4 28.2 1.0
HG3 A:GLN121 4.5 39.4 1.0
CG1 A:ILE124 4.5 21.3 1.0
CA A:SER24 4.5 17.1 1.0
C A:GLY26 4.6 14.8 1.0
CA A:LEU25 4.7 18.2 1.0
N A:ASN27 4.7 14.6 1.0
HD12 A:ILE124 4.7 41.2 1.0
O A:SER24 4.8 15.4 1.0
HB A:VAL120 4.8 23.0 1.0
C A:GLN121 4.8 21.7 1.0
HG22 A:ILE124 4.8 23.7 1.0
HB3 A:GLN121 4.8 31.9 1.0
HD22 A:ASN27 4.9 25.1 1.0
CB A:LEU25 5.0 16.7 1.0

Chlorine binding site 2 out of 5 in 8p2q

Go back to Chlorine Binding Sites List in 8p2q
Chlorine binding site 2 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:25.1
occ:1.00
H A:THR69 2.3 26.2 1.0
O A:HOH379 3.1 15.7 1.0
N A:THR69 3.2 21.8 1.0
HA2 A:GLY67 3.2 19.9 1.0
H A:GLY67 3.2 19.5 1.0
O A:HOH326 3.2 33.5 1.0
O A:THR69 3.3 21.0 1.0
O A:HOH412 3.3 30.9 1.0
H A:ARG68 3.4 20.7 1.0
N A:ARG68 3.5 17.3 1.0
C A:GLY67 3.5 25.4 1.0
HB A:THR69 3.5 21.5 1.0
CA A:GLY67 3.6 16.6 1.0
C A:THR69 3.6 20.4 1.0
OG A:SER72 3.6 25.5 1.0
N A:GLY67 3.6 16.3 1.0
OD1 A:ASN65 3.7 22.2 1.0
HG A:SER72 3.8 30.6 1.0
CA A:THR69 3.8 18.3 1.0
O A:HOH403 4.0 24.2 1.0
CB A:THR69 4.1 17.9 1.0
O A:GLY67 4.1 23.5 1.0
C A:ARG68 4.2 22.6 1.0
H A:ASP66 4.2 21.6 1.0
OD1 A:ASP66 4.3 17.4 1.0
CA A:ARG68 4.3 22.1 1.0
HG1 A:THR69 4.3 21.5 1.0
HA A:ARG68 4.4 26.5 1.0
N A:PRO70 4.4 23.2 1.0
HA A:PRO70 4.4 33.7 1.0
HA3 A:GLY67 4.5 19.9 1.0
H A:SER72 4.6 31.7 1.0
NA A:NA207 4.6 20.9 1.0
HA A:THR69 4.7 22.0 1.0
C A:ASP66 4.7 16.4 1.0
OG1 A:THR69 4.7 17.9 1.0
N A:ASP66 4.9 18.0 1.0
CG A:ASN65 4.9 22.6 1.0
HA A:ASN65 4.9 16.9 1.0
CB A:SER72 4.9 28.3 1.0
CA A:PRO70 4.9 28.1 1.0

Chlorine binding site 3 out of 5 in 8p2q

Go back to Chlorine Binding Sites List in 8p2q
Chlorine binding site 3 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:32.5
occ:0.80
H A:ILE88 2.4 20.6 1.0
HG12 A:ILE88 2.6 21.7 1.0
HA A:ASP87 2.9 20.8 1.0
HZ A:PHE3 3.2 19.9 1.0
N A:ILE88 3.3 17.2 1.0
HH22 A:ARG14 3.3 30.3 1.0
HG22 A:ILE88 3.3 26.5 1.0
HE1 A:HIS15 3.3 30.2 1.0
HB1 A:ALA11 3.4 21.2 1.0
O A:HOH310 3.5 34.7 1.0
CG1 A:ILE88 3.6 18.1 1.0
CA A:ASP87 3.8 17.3 1.0
O A:SER86 3.9 29.4 1.0
NH2 A:ARG14 4.0 25.3 1.0
HG13 A:ILE88 4.0 21.7 1.0
C A:ASP87 4.0 17.6 1.0
HH21 A:ARG14 4.0 30.3 1.0
CG2 A:ILE88 4.1 22.1 1.0
CZ A:PHE3 4.1 16.6 1.0
HB2 A:ALA11 4.1 21.2 1.0
CB A:ILE88 4.1 15.4 1.0
OD1 A:ASP87 4.1 25.3 1.0
CE1 A:HIS15 4.2 25.2 1.0
CB A:ALA11 4.2 17.7 1.0
CA A:ILE88 4.2 17.4 1.0
HE2 A:PHE3 4.4 22.9 1.0
HD12 A:ILE88 4.4 28.2 1.0
CD1 A:ILE88 4.4 23.6 1.0
HD13 A:ILE88 4.5 28.2 1.0
HG23 A:ILE88 4.5 26.5 1.0
CG A:ASP87 4.6 41.9 1.0
H A:THR89 4.6 22.0 1.0
HB3 A:ALA11 4.6 21.2 1.0
CE2 A:PHE3 4.7 19.1 1.0
CB A:ASP87 4.7 22.0 1.0
HG21 A:ILE88 4.7 26.5 1.0
N A:ASP87 4.8 17.9 1.0
C A:SER86 4.8 21.8 1.0
ND1 A:HIS15 4.9 31.1 1.0
HZ1 A:LYS1 4.9 35.0 0.5
HB2 A:ASP87 4.9 26.4 1.0
HH12 A:ARG14 5.0 38.3 1.0
HA A:ILE88 5.0 20.8 1.0
N A:THR89 5.0 18.4 1.0

Chlorine binding site 4 out of 5 in 8p2q

Go back to Chlorine Binding Sites List in 8p2q
Chlorine binding site 4 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:27.8
occ:1.00
OH A:TYR23 2.8 17.7 1.0
O A:HOH393 3.1 34.1 1.0
HE2 A:TYR23 3.3 19.8 1.0
HH A:TYR23 3.3 21.2 1.0
HA3 A:GLY104 3.4 17.7 1.0
CZ A:TYR23 3.6 17.8 1.0
O A:HOH358 3.6 22.7 1.0
O A:HOH374 3.7 28.7 1.0
CE2 A:TYR23 3.7 16.5 1.0
CA A:GLY104 4.3 14.8 1.0
HA2 A:GLY104 4.3 17.7 1.0
H A:MET105 4.6 17.7 1.0
O A:ARG21 4.7 18.9 1.0
CE1 A:TYR23 4.8 16.5 1.0
CD2 A:TYR23 4.9 15.3 1.0
N A:GLY104 4.9 14.5 1.0
HB3 A:ARG21 5.0 22.2 1.0

Chlorine binding site 5 out of 5 in 8p2q

Go back to Chlorine Binding Sites List in 8p2q
Chlorine binding site 5 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:31.0
occ:1.00
HE A:ARG114 2.0 20.9 1.0
HH21 A:ARG114 2.8 22.8 1.0
HB3 A:ARG114 2.9 20.6 1.0
NE A:ARG114 2.9 17.4 1.0
O A:HOH331 3.0 21.3 1.0
HG2 A:ARG114 3.4 21.7 1.0
NH2 A:ARG114 3.4 19.0 1.0
CZ A:ARG114 3.6 21.4 1.0
CB A:ARG114 3.7 17.2 1.0
CG A:ARG114 3.8 18.1 1.0
HZ A:PHE34 3.8 23.2 1.0
CZ A:PHE34 3.9 19.4 1.0
CD A:ARG114 3.9 20.5 1.0
HA A:ARG114 4.0 17.2 1.0
CE1 A:PHE34 4.2 15.3 1.0
HH22 A:ARG114 4.2 22.8 1.0
CE2 A:PHE34 4.2 20.1 1.0
HE1 A:PHE34 4.4 18.3 1.0
HB2 A:ARG114 4.4 20.6 1.0
CA A:ARG114 4.4 14.3 1.0
HE2 A:PHE34 4.4 24.1 1.0
HD3 A:ARG114 4.4 24.6 1.0
O A:ARG114 4.5 18.4 1.0
HD2 A:ARG114 4.5 24.6 1.0
HG3 A:ARG114 4.7 21.7 1.0
CD1 A:PHE34 4.8 14.6 1.0
CD2 A:PHE34 4.8 15.1 1.0
O A:HOH432 4.9 23.1 1.0
NH1 A:ARG114 4.9 20.3 1.0
C A:ARG114 4.9 17.5 1.0

Reference:

Z.Alsalman, A.Roux-Gossart, O.Maury, E.Girard. Design of the Second Generation of Crystallophore For Protein Crystallography To Be Published.
Page generated: Sun Jul 13 13:01:30 2025

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