Chlorine in PDB 8q3g: Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385)

The structure of Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385), PDB code: 8q3g was solved by R.K.Bedi, F.Zalesak, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.75 / 1.42
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40, 103.67, 42.02, 90, 104.36, 90
R / Rfree (%)	22.1 / 23.7

The binding sites of Chlorine atom in the Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385) (pdb code 8q3g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385), PDB code: 8q3g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:53.3 occ:1.00 CL01 A:J7L601 0.0 53.3 1.0 C02 A:J7L601 1.8 41.6 1.0 ND2 A:ASN367 2.7 40.2 1.0 N23 A:J7L601 2.8 42.1 1.0 N03 A:J7L601 2.8 40.6 1.0 ND2 A:ASN364 3.1 46.8 1.0 N A:ASN363 3.2 39.5 1.0 CB A:ASN363 3.4 46.1 1.0 N A:ASN364 3.5 36.9 1.0 CG A:ASN364 3.5 38.6 1.0 OG A:SER362 3.6 33.1 1.0 CA A:ASN363 3.7 40.4 1.0 OD1 A:ASN364 3.7 39.0 1.0 CG A:ASN367 3.8 37.2 1.0 O A:VAL429 3.9 52.9 1.0 CG A:PRO431 3.9 61.2 1.0 C A:ASN363 3.9 38.8 1.0 C04 A:J7L601 4.1 37.4 1.0 C08 A:J7L601 4.2 41.5 1.0 CB A:ASN367 4.2 33.8 1.0 C A:SER362 4.2 34.3 1.0 CD A:PRO431 4.3 63.8 1.0 CB A:ASN364 4.4 37.1 1.0 CA A:ASN364 4.4 35.6 1.0 CG A:ASN363 4.5 49.1 1.0 CA A:SER362 4.5 33.5 1.0 O A:ASN364 4.6 33.5 1.0 OD1 A:ASN363 4.7 47.6 1.0 CB A:SER362 4.7 33.4 1.0 C07 A:J7L601 4.7 40.8 1.0 OD1 A:ASN367 4.8 39.3 1.0 C A:ASN364 5.0 35.3 1.0 O A:ASN363 5.0 40.4 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:43.6 occ:1.00 CL01 B:J7L601 0.0 43.6 1.0 C02 B:J7L601 1.8 35.4 1.0 N03 B:J7L601 2.8 33.4 1.0 N23 B:J7L601 2.8 35.1 1.0 ND2 B:ASN364 3.3 37.1 1.0 ND2 B:ASN367 3.3 30.0 1.0 CG B:ASN364 3.3 34.0 1.0 OD1 B:ASN364 3.3 32.9 1.0 N B:ASN364 3.4 28.6 1.0 N B:ASN363 3.4 29.3 1.0 OG B:SER362 3.6 29.1 1.0 CB B:ASN363 3.8 37.5 1.0 CA B:ASN363 3.8 32.1 1.0 C B:ASN363 3.9 27.3 1.0 CB B:ASN364 4.0 32.4 1.0 CG B:ASN367 4.1 29.0 1.0 C04 B:J7L601 4.1 33.1 1.0 CD B:PRO431 4.1 46.2 1.0 C08 B:J7L601 4.2 36.1 1.0 CA B:ASN364 4.2 30.9 1.0 O B:VAL429 4.2 34.7 1.0 CB B:ASN367 4.2 24.6 1.0 C B:SER362 4.4 25.7 1.0 CG B:PRO431 4.4 46.8 1.0 O B:ASN364 4.6 30.4 1.0 CA B:SER362 4.7 27.6 1.0 CB B:SER362 4.7 26.4 1.0 C07 B:J7L601 4.7 33.4 1.0 C B:ASN364 4.8 28.7 1.0 O B:ASN363 4.9 34.9 1.0

R.K.Bedi, F.Zalesak, A.Caflisch. Crystal Structure of YTHDC1 in Complex with Compound 23 (ZA_385) To Be Published.