Atomistry » Chlorine » PDB 8qk4-8qsf » 8qmm
Atomistry »
  Chlorine »
    PDB 8qk4-8qsf »
      8qmm »

Chlorine in PDB 8qmm: M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima

Protein crystallography data

The structure of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima, PDB code: 8qmm was solved by J.Omeiri, L.Martin, A.Usclat, M.V.Cherrier, Y.Nicolet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.39 / 1.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.81, 82.14, 70.24, 90, 90, 90
R / Rfree (%) 12.6 / 15.2

Other elements in 8qmm:

The structure of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima (pdb code 8qmm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima, PDB code: 8qmm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 8qmm

Go back to Chlorine Binding Sites List in 8qmm
Chlorine binding site 1 out of 6 in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:15.8
occ:0.97
 OG1 A:THR134 3.1 13.6 1.0
O A:HOH992 3.1 36.1 1.0
O A:HOH766 3.2 16.3 1.0
NH1 A:ARG155 3.3 14.2 1.0
NE A:ARG54 3.5 14.2 1.0
CD A:ARG54 3.7 14.3 1.0
CD A:ARG155 3.8 14.3 1.0
SD A:MET224 3.8 14.5 0.6
CB A:THR134 3.9 13.2 1.0
CG A:ARG54 3.9 13.6 1.0
CG2 A:THR134 3.9 12.9 1.0
CG2 A:THR103 3.9 14.4 1.0
CZ A:ARG54 4.0 14.1 1.0
CZ A:ARG155 4.3 13.9 1.0
O A:HOH1005 4.3 29.6 0.6
NH2 A:ARG54 4.3 15.2 1.0
NE A:ARG155 4.4 14.7 1.0
CB A:ARG54 4.5 13.5 1.0
CG2 A:VAL105 4.5 14.0 1.0
CE A:MET224 4.6 16.4 0.4
NH1 A:ARG54 4.7 14.4 1.0
CG A:ARG155 4.8 13.7 1.0
CB A:THR103 4.8 14.2 1.0
CB A:ARG155 4.8 13.4 1.0
CD2 A:LEU157 4.9 17.8 1.0
OG1 A:THR103 4.9 14.3 1.0

Chlorine binding site 2 out of 6 in 8qmm

Go back to Chlorine Binding Sites List in 8qmm
Chlorine binding site 2 out of 6 in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:19.4
occ:0.67
 O A:HOH834 2.5 101.8 1.0
N A:ASN293 3.2 13.4 1.0
NH2 A:ARG279 3.4 28.4 1.0
NH1 A:ARG279 3.5 26.1 1.0
CA A:PRO292 3.5 13.2 1.0
CB A:SER319 3.8 16.3 1.0
C A:PRO292 3.9 13.4 1.0
CZ A:ARG279 3.9 39.0 1.0
CB A:ASN293 4.0 14.9 0.6
CB A:ASN293 4.1 15.5 0.4
CA A:ASN293 4.2 13.7 0.6
CA A:ASN293 4.2 14.0 0.4
CB A:PRO292 4.3 14.3 1.0
O A:ILE291 4.4 14.6 1.0
O A:HOH936 4.6 48.8 0.9
N A:PRO292 4.6 13.2 1.0
OG A:SER319 4.7 16.5 1.0
O A:HOH509 4.8 81.1 1.0
CG1 A:VAL323 4.8 16.8 1.0
CA A:SER319 4.8 16.0 1.0
C A:ILE291 4.9 13.1 1.0
OG1 A:THR269 5.0 17.6 0.5
O A:HOH705 5.0 47.4 1.0
O A:ASN293 5.0 16.2 1.0

Chlorine binding site 3 out of 6 in 8qmm

Go back to Chlorine Binding Sites List in 8qmm
Chlorine binding site 3 out of 6 in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:17.2
occ:0.68
 O A:HOH990 1.4 22.7 0.4
O A:HOH822 3.1 17.4 1.0
NH1 A:ARG159 3.3 18.7 1.0
O A:HOH924 3.3 29.2 1.0
O A:HOH862 3.3 18.4 1.0
CG A:PRO266 3.4 16.5 0.6
O A:HOH876 3.5 54.9 1.0
CA A:GLY226 3.8 12.9 1.0
CG A:PRO266 3.9 11.7 0.4
CD1 A:ILE291 3.9 21.2 1.0
CG2 A:THR268 4.0 16.1 1.0
NE A:ARG159 4.1 17.6 1.0
CZ A:ARG159 4.2 18.4 1.0
O A:HOH796 4.2 24.1 1.0
CB A:PRO266 4.3 13.1 0.4
CB A:PRO266 4.3 14.2 0.6
CD A:PRO266 4.6 15.2 0.6
O A:HOH1005 4.6 29.6 0.6
CD A:PRO266 4.6 11.2 0.4
O A:HOH725 4.7 15.7 1.0
C A:GLY226 4.8 12.6 1.0
N A:GLY226 4.8 11.9 1.0
CD1 A:LEU157 4.8 17.4 1.0

Chlorine binding site 4 out of 6 in 8qmm

Go back to Chlorine Binding Sites List in 8qmm
Chlorine binding site 4 out of 6 in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:23.9
occ:0.83
 O A:HOH612 3.1 28.8 1.0
O A:HOH729 3.1 23.4 0.5
O A:HOH876 3.2 54.9 1.0
OH A:TYR306 3.4 20.9 1.0
N A:ALA270 3.4 15.2 1.0
CB A:ALA270 3.6 15.5 1.0
NH1 A:ARG159 3.8 18.7 1.0
O A:HOH729 3.8 25.6 0.5
CB A:THR268 3.8 15.0 1.0
N A:THR269 4.0 16.7 1.0
CA A:ALA270 4.1 15.1 1.0
CE2 A:TYR306 4.2 16.8 1.0
CZ A:TYR306 4.2 16.8 1.0
OG1 A:THR268 4.2 15.8 1.0
CB A:THR269 4.3 13.5 0.5
C A:THR269 4.3 15.5 1.0
CA A:THR269 4.4 14.7 0.5
NH2 A:ARG159 4.4 20.1 1.0
CB A:THR269 4.4 35.0 0.5
CA A:THR269 4.4 20.6 0.5
CZ A:ARG159 4.5 18.4 1.0
CG2 A:THR268 4.5 16.1 1.0
O A:HOH715 4.6 38.4 1.0
C A:THR268 4.6 14.2 1.0
CA A:THR268 4.7 14.2 1.0
OG1 A:THR269 4.9 23.8 0.5
O A:HOH970 5.0 29.2 1.0

Chlorine binding site 5 out of 6 in 8qmm

Go back to Chlorine Binding Sites List in 8qmm
Chlorine binding site 5 out of 6 in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:80.8
occ:0.38
 CL A:CL408 0.0 80.8 0.4
CL A:CL408 1.8 93.6 0.6
N A:MET-9 2.9 30.6 1.0
CD1 A:TRP-8 3.6 34.7 0.4
O A:MET-9 3.6 48.0 1.0
C A:MET-9 3.8 36.6 1.0
CA A:MET-9 3.8 32.7 1.0
CD1 A:TRP-8 3.8 40.0 0.6
NE1 A:TRP-8 4.1 34.2 0.4
O A:HOH687 4.3 35.0 1.0
N A:TRP-8 4.6 34.2 1.0
NE1 A:TRP-8 4.7 32.8 0.6
CG A:TRP-8 4.7 32.4 0.4
CG A:TRP-8 4.8 37.3 0.6

Chlorine binding site 6 out of 6 in 8qmm

Go back to Chlorine Binding Sites List in 8qmm
Chlorine binding site 6 out of 6 in the M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of M291I Variant of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:93.6
occ:0.62
 CL A:CL408 0.0 93.6 0.6
CL A:CL408 1.8 80.8 0.4
N A:MET-9 3.0 30.6 1.0
NE1 A:TRP-8 3.5 34.2 0.4
CD1 A:TRP-8 3.5 34.7 0.4
CD1 A:TRP-8 3.8 40.0 0.6
CA A:MET-9 4.0 32.7 1.0
NE1 A:TRP-8 4.1 32.8 0.6
C A:MET-9 4.5 36.6 1.0
O A:MET-9 4.7 48.0 1.0
CE2 A:TRP-8 4.8 31.1 0.4
CG A:TRP-8 4.9 32.4 0.4

Reference:

J.Omeiri, L.Martin, A.Usclat, M.V.Cherrier, Y.Nicolet. Maturation of the [Fefe]-Hydrogenase: Direct Transfer of the ( Kappa 3-Cysteinate)Feii(Cn)(Co)2 Complex-B From Hydg to Hyde. Angew.Chem.Int.Ed.Engl. 14819 2023.
ISSN: ESSN 1521-3773
PubMed: 37962296
DOI: 10.1002/ANIE.202314819
Page generated: Sun Jul 13 13:36:08 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy