Atomistry » Chlorine » PDB 8qlr-8qtf » 8qs2
Atomistry »
  Chlorine »
    PDB 8qlr-8qtf »
      8qs2 »

Chlorine in PDB 8qs2: Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409)

Protein crystallography data

The structure of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409), PDB code: 8qs2 was solved by M.Konstantinidou, H.Vickery, M.A.M.Pennings, J.Virta, E.J.Visser, M.C.M.Oetelaar, M.Overmans, J.Neitz, C.Ottmann, L.Brunsveld, M.R.Arkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.49 / 2.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.27, 148.983, 76.532, 90, 90, 90
R / Rfree (%) 20.1 / 23

Other elements in 8qs2:

The structure of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409) also contains other interesting chemical elements:

Fluorine (F) 1 atom
Magnesium (Mg) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409) (pdb code 8qs2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409), PDB code: 8qs2:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8qs2

Go back to Chlorine Binding Sites List in 8qs2
Chlorine binding site 1 out of 3 in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:50.8
occ:1.00
O A:HOH500 2.8 60.1 1.0
O A:HOH504 2.9 55.4 1.0
CA A:TYR84 3.8 46.7 1.0
O A:GLU83 3.9 47.3 1.0
N A:TYR84 3.9 48.0 1.0
C A:GLU83 4.0 47.2 1.0
CD A:LYS87 4.0 54.4 1.0
CB A:LYS87 4.2 48.9 1.0
CD1 A:TYR84 4.2 46.2 1.0
CB A:TYR84 4.2 45.8 1.0
CB A:GLU83 4.3 49.1 1.0
CG A:LYS87 4.6 52.6 1.0
CE A:LYS87 4.7 57.7 1.0
CG A:TYR84 4.7 45.9 1.0
CA A:GLU83 4.8 49.8 1.0

Chlorine binding site 2 out of 3 in 8qs2

Go back to Chlorine Binding Sites List in 8qs2
Chlorine binding site 2 out of 3 in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:115.7
occ:1.00
CG A:LYS160 3.9 69.7 1.0
CB A:ASP156 4.0 61.2 1.0
O A:ASP156 4.1 58.1 1.0
CE A:LYS160 4.1 83.4 1.0
CD A:LYS160 4.3 77.2 1.0
C A:ASP156 4.5 56.3 1.0
CA A:ASP156 4.5 57.3 1.0
CG A:ASP156 4.6 65.2 1.0
NZ A:LYS160 4.7 87.2 1.0
CB A:LYS160 4.9 64.2 1.0
OD2 A:ASP156 4.9 65.4 1.0

Chlorine binding site 3 out of 3 in 8qs2

Go back to Chlorine Binding Sites List in 8qs2
Chlorine binding site 3 out of 3 in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 29 (1076409) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:59.6
occ:1.00
CL2 A:WPW307 0.0 59.6 1.0
C10 A:WPW307 1.7 50.2 1.0
C11 A:WPW307 2.7 46.5 1.0
C9 A:WPW307 2.7 50.0 1.0
F1 A:WPW307 2.9 48.2 1.0
CB A:ASP215 3.7 49.0 1.0
CG2 P:VAL263 3.7 64.3 1.0
CG1 P:VAL263 3.8 61.4 1.0
CA A:ASP215 3.8 46.2 1.0
OD1 A:ASP215 3.9 55.1 1.0
CD2 A:LEU218 3.9 47.4 1.0
O A:ASP215 3.9 41.0 1.0
CG A:ASP215 3.9 53.3 1.0
CD1 A:ILE219 3.9 48.2 1.0
C12 A:WPW307 4.0 45.8 1.0
C8 A:WPW307 4.0 48.9 1.0
CG1 A:ILE219 4.2 44.8 1.0
C A:ASP215 4.3 45.5 1.0
CB P:VAL263 4.4 67.0 1.0
C7 A:WPW307 4.5 48.0 1.0
CG A:LEU218 4.6 43.9 1.0
CB A:LEU218 4.6 46.9 1.0
OD2 A:ASP215 4.6 55.3 1.0
O A:HOH459 4.6 63.7 1.0
CG P:PRO261 4.7 51.3 1.0
CD P:PRO261 4.8 48.4 1.0
O P:PRO261 5.0 52.4 1.0

Reference:

M.Konstantinidou, H.Vickery, M.A.M.Pennings, J.Virta, E.J.Visser, M.C.M.Oetelaar, M.Overmans, J.Neitz, C.Ottmann, L.Brunsveld, M.R.Arkin. Small Molecule Stabilization of the 14-3-3SIGMA/Craf Complex Inhibits the Mapk Pathway To Be Published.
Page generated: Sun Jul 13 13:38:34 2025

Last articles

Mg in 8WEJ
Mg in 8WDO
Mg in 8WDN
Mg in 8WD8
Mg in 8WDG
Mg in 8WDH
Mg in 8WD0
Mg in 8WDB
Mg in 8WCX
Mg in 8WCN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy