Atomistry » Chlorine » PDB 8ttj-8u69 » 8txn
Atomistry »
  Chlorine »
    PDB 8ttj-8u69 »
      8txn »

Chlorine in PDB 8txn: Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer

Protein crystallography data

The structure of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer, PDB code: 8txn was solved by S.P.Boudko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.69 / 1.75
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 139.12, 139.12, 103.381, 90, 90, 120
R / Rfree (%) 14.2 / 16.4

Other elements in 8txn:

The structure of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer (pdb code 8txn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer, PDB code: 8txn:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 1 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3002

b:13.5
occ:1.00
 O A:HOH4260 3.1 13.0 1.0
O A:HOH4051 3.1 15.1 1.0
N A:ARG2076 3.3 13.0 1.0
C A:ARG2076 3.4 12.4 1.0
N A:ASP2078 3.4 10.9 1.0
N A:ASN2077 3.5 12.4 1.0
O A:ARG2076 3.6 14.5 1.0
CD2 A:LEU2060 3.7 20.8 1.0
C A:ALA2074 3.7 15.6 1.0
CA A:ALA2074 3.7 14.4 1.0
N A:SER2075 3.7 13.2 1.0
CA A:ARG2076 3.8 13.2 1.0
CB A:ALA2177 4.1 13.9 1.0
CA A:ASN2077 4.1 12.8 1.0
CB A:ASP2078 4.1 13.4 1.0
NH2 D:ARG1181 4.2 16.7 1.0
O A:ALA2074 4.2 15.9 1.0
C A:ASN2077 4.3 12.8 1.0
CA A:ASP2078 4.3 10.9 1.0
C A:SER2075 4.3 17.9 1.0
O A:HOH4315 4.3 15.2 1.0
N A:ALA2177 4.4 14.3 1.0
CB A:ARG2076 4.4 12.3 1.0
OD2 A:ASP2078 4.5 17.8 1.0
N A:ALA2074 4.5 14.3 1.0
O A:ASP2078 4.5 11.8 1.0
CG A:ASP2078 4.5 15.0 1.0
CA A:SER2075 4.6 15.6 1.0
CD1 A:LEU2060 4.8 17.1 1.0
CA A:ALA2177 4.8 14.1 1.0
O A:HOH4203 4.8 16.6 1.0
CB A:ALA2074 4.8 15.3 1.0
CG A:LEU2060 4.8 21.0 1.0
C A:ASP2078 4.8 11.4 1.0

Chlorine binding site 2 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 2 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3003

b:20.0
occ:1.00
 O A:HOH4053 3.0 20.5 1.0
O A:HOH4150 3.1 21.6 1.0
N A:ARG76 3.2 14.8 1.0
N A:ASP78 3.3 14.6 1.0
C A:ARG76 3.4 21.5 1.0
O A:ARG76 3.6 21.9 1.0
N A:ASN77 3.6 16.5 1.0
N A:SER75 3.7 19.8 1.0
CA A:ARG76 3.7 15.7 1.0
CA A:ALA74 3.7 18.1 1.0
CD2 A:LEU60 3.8 20.9 1.0
C A:ALA74 3.8 21.7 1.0
CB A:ASP78 3.9 12.8 1.0
O A:HOH4316 4.0 17.9 1.0
CA A:ASP78 4.2 13.6 1.0
CB A:ARG76 4.2 17.2 1.0
CA A:ASN77 4.2 19.4 0.6
OD2 A:ASP78 4.2 17.5 1.0
CA A:ASN77 4.2 19.4 0.4
C A:ASN77 4.2 16.3 1.0
CG A:ASP78 4.2 15.8 1.0
CB A:ALA177 4.3 22.3 1.0
C A:SER75 4.3 21.7 1.0
N A:ALA74 4.4 15.6 1.0
O A:ASP78 4.5 14.0 1.0
O A:ALA74 4.5 19.2 1.0
CA A:SER75 4.5 18.6 1.0
N A:ALA177 4.6 19.1 1.0
O A:HOH4246 4.7 32.8 1.0
CD1 A:LEU60 4.7 20.3 1.0
C A:ASP78 4.8 13.2 1.0
CB A:ALA74 4.9 20.7 1.0
CG A:LEU60 4.9 19.7 1.0
O A:HOH4239 4.9 18.8 1.0
CA A:ALA177 5.0 18.0 1.0

Chlorine binding site 3 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 3 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3001

b:12.1
occ:1.00
 O D:HOH4240 3.1 13.5 1.0
O D:HOH4077 3.1 13.5 1.0
N D:ARG2076 3.3 11.6 1.0
C D:ARG2076 3.4 12.0 1.0
N D:ASP2078 3.4 10.7 1.0
N D:ASN2077 3.5 10.9 1.0
O D:ARG2076 3.6 13.9 1.0
CA D:ALA2074 3.6 13.3 1.0
C D:ALA2074 3.7 14.2 1.0
CD1 D:LEU2060 3.7 17.7 1.0
N D:SER2075 3.8 11.9 1.0
CA D:ARG2076 3.8 12.5 1.0
CA D:ASN2077 4.1 11.3 1.0
CB D:ALA2177 4.1 13.1 1.0
CB D:ASP2078 4.2 9.9 1.0
NH2 A:ARG1181 4.2 14.0 1.0
O D:ALA2074 4.2 13.6 1.0
C D:ASN2077 4.2 11.5 1.0
CA D:ASP2078 4.3 11.0 1.0
C D:SER2075 4.3 13.9 1.0
O D:HOH4185 4.4 12.2 1.0
N D:ALA2074 4.4 13.6 1.0
CB D:ARG2076 4.5 11.8 1.0
N D:ALA2177 4.5 11.9 1.0
O D:ASP2078 4.5 11.9 1.0
OD2 D:ASP2078 4.5 14.4 1.0
CG D:ASP2078 4.6 12.2 1.0
CD2 D:LEU2060 4.6 14.7 1.0
CA D:SER2075 4.6 14.5 1.0
CG D:LEU2060 4.6 21.6 1.0
CB D:ALA2074 4.7 14.4 1.0
O D:HOH4204 4.8 15.7 1.0
C D:ASP2078 4.8 11.3 1.0
CA D:ALA2177 4.8 13.2 1.0

Chlorine binding site 4 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 4 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3002

b:29.0
occ:1.00
 O D:HOH4022 2.9 23.7 1.0
O D:HOH4105 3.1 21.6 1.0
N D:ARG76 3.2 16.0 1.0
C D:ARG76 3.3 22.1 1.0
N D:ASP78 3.3 15.9 1.0
O D:ARG76 3.4 23.8 1.0
N D:SER75 3.7 19.4 1.0
N D:ASN77 3.7 19.6 1.0
CA D:ALA74 3.7 18.9 1.0
CA D:ARG76 3.7 15.9 1.0
CD2 D:LEU60 3.8 21.3 1.0
CB D:ASP78 3.8 13.7 1.0
C D:ALA74 3.8 21.4 1.0
O D:HOH4346 4.0 21.5 1.0
OD2 D:ASP78 4.1 20.1 1.0
CA D:ASP78 4.1 15.1 1.0
CA D:ASN77 4.2 20.1 0.6
CG D:ASP78 4.2 17.2 1.0
CB D:ALA177 4.2 27.2 1.0
CA D:ASN77 4.2 20.1 0.4
CB D:ARG76 4.2 15.2 1.0
C D:ASN77 4.3 17.4 1.0
C D:SER75 4.3 23.3 1.0
N D:ALA74 4.4 16.3 1.0
O D:ASP78 4.5 17.4 1.0
N D:ALA177 4.6 20.9 1.0
CD1 D:LEU60 4.6 17.1 1.0
O D:ALA74 4.6 21.1 1.0
CA D:SER75 4.6 21.1 1.0
C D:ASP78 4.7 15.4 1.0
O D:HOH4206 4.8 16.3 1.0
CG D:LEU60 4.8 19.7 1.0
O D:HOH4187 4.8 29.8 1.0
CB D:ALA74 4.9 22.1 1.0
CA D:ALA177 4.9 19.9 1.0

Reference:

J.A.Summers, M.Yarbrough, M.Liu, W.H.Mcdonald, B.G.Hudson, J.C.Pastor-Pareja, S.P.Boudko. Collagen IV of Basement Membranes: IV. Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila. J.Biol.Chem. 05394 2023.
ISSN: ESSN 1083-351X
PubMed: 37890775
DOI: 10.1016/J.JBC.2023.105394
Page generated: Sun Jul 13 14:37:29 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy