Atomistry » Chlorine » PDB 8tv2-8u6c » 8txn
Atomistry »
  Chlorine »
    PDB 8tv2-8u6c »
      8txn »

Chlorine in PDB 8txn: Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer

Protein crystallography data

The structure of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer, PDB code: 8txn was solved by S.P.Boudko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.69 / 1.75
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 139.12, 139.12, 103.381, 90, 90, 120
R / Rfree (%) 14.2 / 16.4

Other elements in 8txn:

The structure of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer (pdb code 8txn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer, PDB code: 8txn:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 1 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3002

b:13.5
occ:1.00
 O A:HOH4260 3.1 13.0 1.0
O A:HOH4051 3.1 15.1 1.0
N A:ARG2076 3.3 13.0 1.0
C A:ARG2076 3.4 12.4 1.0
N A:ASP2078 3.4 10.9 1.0
N A:ASN2077 3.5 12.4 1.0
O A:ARG2076 3.6 14.5 1.0
CD2 A:LEU2060 3.7 20.8 1.0
C A:ALA2074 3.7 15.6 1.0
CA A:ALA2074 3.7 14.4 1.0
N A:SER2075 3.7 13.2 1.0
CA A:ARG2076 3.8 13.2 1.0
CB A:ALA2177 4.1 13.9 1.0
CA A:ASN2077 4.1 12.8 1.0
CB A:ASP2078 4.1 13.4 1.0
NH2 D:ARG1181 4.2 16.7 1.0
O A:ALA2074 4.2 15.9 1.0
C A:ASN2077 4.3 12.8 1.0
CA A:ASP2078 4.3 10.9 1.0
C A:SER2075 4.3 17.9 1.0
O A:HOH4315 4.3 15.2 1.0
N A:ALA2177 4.4 14.3 1.0
CB A:ARG2076 4.4 12.3 1.0
OD2 A:ASP2078 4.5 17.8 1.0
N A:ALA2074 4.5 14.3 1.0
O A:ASP2078 4.5 11.8 1.0
CG A:ASP2078 4.5 15.0 1.0
CA A:SER2075 4.6 15.6 1.0
CD1 A:LEU2060 4.8 17.1 1.0
CA A:ALA2177 4.8 14.1 1.0
O A:HOH4203 4.8 16.6 1.0
CB A:ALA2074 4.8 15.3 1.0
CG A:LEU2060 4.8 21.0 1.0
C A:ASP2078 4.8 11.4 1.0

Chlorine binding site 2 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 2 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3003

b:20.0
occ:1.00
 O A:HOH4053 3.0 20.5 1.0
O A:HOH4150 3.1 21.6 1.0
N A:ARG76 3.2 14.8 1.0
N A:ASP78 3.3 14.6 1.0
C A:ARG76 3.4 21.5 1.0
O A:ARG76 3.6 21.9 1.0
N A:ASN77 3.6 16.5 1.0
N A:SER75 3.7 19.8 1.0
CA A:ARG76 3.7 15.7 1.0
CA A:ALA74 3.7 18.1 1.0
CD2 A:LEU60 3.8 20.9 1.0
C A:ALA74 3.8 21.7 1.0
CB A:ASP78 3.9 12.8 1.0
O A:HOH4316 4.0 17.9 1.0
CA A:ASP78 4.2 13.6 1.0
CB A:ARG76 4.2 17.2 1.0
CA A:ASN77 4.2 19.4 0.6
OD2 A:ASP78 4.2 17.5 1.0
CA A:ASN77 4.2 19.4 0.4
C A:ASN77 4.2 16.3 1.0
CG A:ASP78 4.2 15.8 1.0
CB A:ALA177 4.3 22.3 1.0
C A:SER75 4.3 21.7 1.0
N A:ALA74 4.4 15.6 1.0
O A:ASP78 4.5 14.0 1.0
O A:ALA74 4.5 19.2 1.0
CA A:SER75 4.5 18.6 1.0
N A:ALA177 4.6 19.1 1.0
O A:HOH4246 4.7 32.8 1.0
CD1 A:LEU60 4.7 20.3 1.0
C A:ASP78 4.8 13.2 1.0
CB A:ALA74 4.9 20.7 1.0
CG A:LEU60 4.9 19.7 1.0
O A:HOH4239 4.9 18.8 1.0
CA A:ALA177 5.0 18.0 1.0

Chlorine binding site 3 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 3 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3001

b:12.1
occ:1.00
 O D:HOH4240 3.1 13.5 1.0
O D:HOH4077 3.1 13.5 1.0
N D:ARG2076 3.3 11.6 1.0
C D:ARG2076 3.4 12.0 1.0
N D:ASP2078 3.4 10.7 1.0
N D:ASN2077 3.5 10.9 1.0
O D:ARG2076 3.6 13.9 1.0
CA D:ALA2074 3.6 13.3 1.0
C D:ALA2074 3.7 14.2 1.0
CD1 D:LEU2060 3.7 17.7 1.0
N D:SER2075 3.8 11.9 1.0
CA D:ARG2076 3.8 12.5 1.0
CA D:ASN2077 4.1 11.3 1.0
CB D:ALA2177 4.1 13.1 1.0
CB D:ASP2078 4.2 9.9 1.0
NH2 A:ARG1181 4.2 14.0 1.0
O D:ALA2074 4.2 13.6 1.0
C D:ASN2077 4.2 11.5 1.0
CA D:ASP2078 4.3 11.0 1.0
C D:SER2075 4.3 13.9 1.0
O D:HOH4185 4.4 12.2 1.0
N D:ALA2074 4.4 13.6 1.0
CB D:ARG2076 4.5 11.8 1.0
N D:ALA2177 4.5 11.9 1.0
O D:ASP2078 4.5 11.9 1.0
OD2 D:ASP2078 4.5 14.4 1.0
CG D:ASP2078 4.6 12.2 1.0
CD2 D:LEU2060 4.6 14.7 1.0
CA D:SER2075 4.6 14.5 1.0
CG D:LEU2060 4.6 21.6 1.0
CB D:ALA2074 4.7 14.4 1.0
O D:HOH4204 4.8 15.7 1.0
C D:ASP2078 4.8 11.3 1.0
CA D:ALA2177 4.8 13.2 1.0

Chlorine binding site 4 out of 4 in 8txn

Go back to Chlorine Binding Sites List in 8txn
Chlorine binding site 4 out of 4 in the Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila: Crystal Structure of Recombinant NC1 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3002

b:29.0
occ:1.00
 O D:HOH4022 2.9 23.7 1.0
O D:HOH4105 3.1 21.6 1.0
N D:ARG76 3.2 16.0 1.0
C D:ARG76 3.3 22.1 1.0
N D:ASP78 3.3 15.9 1.0
O D:ARG76 3.4 23.8 1.0
N D:SER75 3.7 19.4 1.0
N D:ASN77 3.7 19.6 1.0
CA D:ALA74 3.7 18.9 1.0
CA D:ARG76 3.7 15.9 1.0
CD2 D:LEU60 3.8 21.3 1.0
CB D:ASP78 3.8 13.7 1.0
C D:ALA74 3.8 21.4 1.0
O D:HOH4346 4.0 21.5 1.0
OD2 D:ASP78 4.1 20.1 1.0
CA D:ASP78 4.1 15.1 1.0
CA D:ASN77 4.2 20.1 0.6
CG D:ASP78 4.2 17.2 1.0
CB D:ALA177 4.2 27.2 1.0
CA D:ASN77 4.2 20.1 0.4
CB D:ARG76 4.2 15.2 1.0
C D:ASN77 4.3 17.4 1.0
C D:SER75 4.3 23.3 1.0
N D:ALA74 4.4 16.3 1.0
O D:ASP78 4.5 17.4 1.0
N D:ALA177 4.6 20.9 1.0
CD1 D:LEU60 4.6 17.1 1.0
O D:ALA74 4.6 21.1 1.0
CA D:SER75 4.6 21.1 1.0
C D:ASP78 4.7 15.4 1.0
O D:HOH4206 4.8 16.3 1.0
CG D:LEU60 4.8 19.7 1.0
O D:HOH4187 4.8 29.8 1.0
CB D:ALA74 4.9 22.1 1.0
CA D:ALA177 4.9 19.9 1.0

Reference:

J.A.Summers, M.Yarbrough, M.Liu, W.H.Mcdonald, B.G.Hudson, J.C.Pastor-Pareja, S.P.Boudko. Collagen IV of Basement Membranes: IV. Adaptive Mechanism of Collagen IV Scaffold Assembly in Drosophila. J.Biol.Chem. 05394 2023.
ISSN: ESSN 1083-351X
PubMed: 37890775
DOI: 10.1016/J.JBC.2023.105394
Page generated: Sun Jul 13 14:37:29 2025

Last articles

Mn in 5OR2
Mn in 5ONW
Mn in 5ONG
Mn in 5OLK
Mn in 5OMV
Mn in 5OMQ
Mn in 5OEY
Mn in 5OMF
Mn in 5OF3
Mn in 5OGL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy