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Chlorine in PDB 8u2p: Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)

Enzymatic activity of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)

All present enzymatic activity of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound):
6.1.1.14;

Protein crystallography data

The structure of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound), PDB code: 8u2p was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.15 / 2.25
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 124.293, 124.293, 131.383, 90, 90, 120
R / Rfree (%) 17.9 / 20.8

Other elements in 8u2p:

The structure of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) (pdb code 8u2p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound), PDB code: 8u2p:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8u2p

Go back to Chlorine Binding Sites List in 8u2p
Chlorine binding site 1 out of 2 in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl509

b:71.9
occ:1.00
NH2 A:ARG410 3.3 62.1 1.0
NH1 A:ARG410 3.6 60.4 1.0
O A:ARG14 3.8 43.0 1.0
CZ A:ARG410 3.9 59.9 1.0
NE A:ARG15 4.0 47.3 1.0
CD A:ARG15 4.1 40.7 1.0
CA A:ARG15 4.7 35.9 1.0
C A:ARG14 4.8 41.0 1.0
CZ A:ARG15 4.9 43.5 1.0

Chlorine binding site 2 out of 2 in 8u2p

Go back to Chlorine Binding Sites List in 8u2p
Chlorine binding site 2 out of 2 in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:71.4
occ:1.00
OD1 A:ASP58 3.0 52.0 1.0
N A:ASP58 3.4 38.0 1.0
CG A:ASP58 3.6 44.9 1.0
CA A:ARG57 3.8 35.6 1.0
CB A:ARG57 3.9 31.5 1.0
OD2 A:ASP58 4.1 59.0 1.0
C A:ARG57 4.1 41.7 1.0
OD1 A:ASP59 4.2 33.2 1.0
CG A:ARG57 4.3 34.2 1.0
CB A:ASP58 4.3 45.6 1.0
CA A:ASP58 4.4 39.4 1.0
NH2 A:ARG57 4.4 37.2 1.0
NE A:ARG57 4.4 35.0 1.0
CZ A:ARG57 4.4 29.2 1.0
CG A:ASP59 4.5 41.9 1.0
OD2 A:ASP59 4.6 41.9 1.0
N A:ASP59 4.7 35.8 1.0
C A:ASP58 4.9 36.6 1.0
O A:GLY56 5.0 35.8 1.0

Reference:

S.Seibold, S.Lovell, K.P.Battaile, A.Derocher. Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) To Be Published.
Page generated: Sun Jul 13 14:40:58 2025

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