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Chlorine in PDB 8u2x: Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant)

Protein crystallography data

The structure of Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant), PDB code: 8u2x was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.55 / 2.25
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 151.372, 151.372, 108.745, 90, 90, 120
R / Rfree (%) 18.7 / 21.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant) (pdb code 8u2x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant), PDB code: 8u2x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8u2x

Go back to Chlorine Binding Sites List in 8u2x
Chlorine binding site 1 out of 2 in the Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:78.4
occ:1.00
N A:GLU146 3.3 52.5 1.0
O A:GLY126 3.6 60.6 1.0
CB A:THR145 3.7 53.8 1.0
C A:GLY126 3.8 58.6 1.0
CA A:THR145 3.8 51.3 1.0
C A:THR145 4.1 49.5 1.0
N A:ARG127 4.1 60.4 1.0
N A:GLY147 4.2 56.8 1.0
CB A:GLU146 4.2 54.2 1.0
CA A:GLU146 4.3 54.1 1.0
CG2 A:THR145 4.3 56.5 1.0
CA A:GLY126 4.3 53.0 1.0
CA A:ARG127 4.4 61.5 1.0
CG A:ARG127 4.6 57.5 1.0
CG A:GLU146 4.7 55.1 1.0
C A:GLU146 4.7 55.2 1.0
OG1 A:THR145 4.8 57.6 1.0

Chlorine binding site 2 out of 2 in 8u2x

Go back to Chlorine Binding Sites List in 8u2x
Chlorine binding site 2 out of 2 in the Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:71.7
occ:1.00
OG1 A:THR322 3.4 46.4 1.0
O A:HOH520 3.5 46.1 1.0
N A:THR322 3.5 40.2 1.0
O A:LYS320 3.8 49.4 1.0
CA A:VAL321 4.0 49.2 1.0
CB A:THR322 4.0 42.5 1.0
C A:VAL321 4.2 45.0 1.0
C A:LYS320 4.4 51.2 1.0
CA A:THR322 4.4 38.9 1.0
N A:VAL321 4.5 47.2 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile. Crystal Structure of Nendou (Uridylate-Specific Endoribonuclease, NSP15) From Betacoronavirus Sars-Cov-2 (H235A Mutant) To Be Published.
Page generated: Sun Jul 13 14:41:41 2025

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