Chlorine in PDB 8udi: Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact

The structure of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact, PDB code: 8udi was solved by J.Propp, M.A.Spies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.54 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.317, 81.969, 113.937, 90, 90, 90
R / Rfree (%)	19 / 23.1

The structure of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact (pdb code 8udi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact, PDB code: 8udi:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:74.1 occ:1.00 OG A:SER152 3.5 59.0 1.0 O A:ILE149 3.9 40.4 1.0 NE1 A:TRP252 3.9 52.2 1.0 CD2 A:LEU186 4.1 42.4 1.0 CE2 A:TRP252 4.3 50.1 1.0 CA A:SER152 4.4 49.9 1.0 CD1 A:TRP252 4.4 51.2 1.0 CB A:SER152 4.5 54.8 1.0 CD1 A:LEU154 4.5 48.7 1.0 CZ2 A:TRP252 4.6 48.4 1.0 N A:SER152 4.8 46.8 1.0 CD2 A:TRP252 4.9 51.6 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Helicobacter Pylori Glutamate Racemase Bound to D-Glutamate and A Crystallographic Artifact within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:60.4 occ:1.00 O B:ILE149 3.9 34.8 1.0 CD1 B:LEU186 3.9 38.8 1.0 OG B:SER152 3.9 57.6 1.0 NE1 B:TRP252 4.0 41.5 1.0 CE2 B:TRP252 4.3 42.1 1.0 CD1 B:LEU154 4.3 42.1 1.0 CA B:SER152 4.4 43.8 1.0 CB B:SER152 4.4 42.4 1.0 CD1 B:TRP252 4.5 38.3 1.0 CZ2 B:TRP252 4.6 38.2 1.0 CG B:GLU251 4.7 60.5 1.0 OE1 B:GLN248 4.8 53.4 1.0 N B:SER152 4.8 42.5 1.0 CD2 B:TRP252 4.9 37.6 1.0 CG B:TRP252 5.0 39.8 1.0

J.Propp, M.A.Spies. Structure of H. Pylori Glutamate Racemace with A Crystallographic Artifact To Be Published.