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Chlorine in PDB 8uf4: Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain)

Protein crystallography data

The structure of Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain), PDB code: 8uf4 was solved by M.J.M.Anderson, K.Shi, A.N.Hayward, C.Uhlens, R.L.Evans Iii, E.Grant, L.Greenberg, H.Aihara, W.R.Gordon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.43 / 2.43
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.945, 86.577, 128, 90, 90, 90
R / Rfree (%) 22.5 / 27.5

Other elements in 8uf4:

The structure of Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain) (pdb code 8uf4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain), PDB code: 8uf4:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8uf4

Go back to Chlorine Binding Sites List in 8uf4
Chlorine binding site 1 out of 2 in the Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:44.7
occ:1.00
NH2 A:ARG597 2.9 111.7 1.0
NE A:ARG597 3.1 114.4 1.0
CZ A:ARG597 3.4 113.7 1.0
CB A:HIS596 3.7 37.2 1.0
ND1 A:HIS596 3.8 49.6 1.0
N A:ARG597 3.8 65.1 1.0
CA A:HIS596 4.0 39.0 1.0
CG A:HIS596 4.2 48.3 1.0
CD A:ARG597 4.3 89.1 1.0
CG A:ARG597 4.4 72.4 1.0
C A:HIS596 4.4 48.6 1.0
CB A:ARG597 4.5 64.9 1.0
NH1 A:ARG597 4.7 88.7 1.0
CA A:ARG597 4.8 63.8 1.0
CE1 A:HIS596 4.9 40.8 1.0

Chlorine binding site 2 out of 2 in 8uf4

Go back to Chlorine Binding Sites List in 8uf4
Chlorine binding site 2 out of 2 in the Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Wildtype Dystroglycan Proteolytic Domain (Juxtamembrane Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl701

b:60.5
occ:1.00
N C:ARG597 3.4 46.7 1.0
CB C:HIS596 3.5 44.5 1.0
ND1 C:HIS596 3.7 47.4 1.0
CA C:HIS596 3.7 37.9 1.0
CG C:HIS596 4.0 48.7 1.0
C C:HIS596 4.1 38.8 1.0
NH1 C:ARG597 4.1 73.9 1.0
CB C:ARG597 4.3 54.0 1.0
CA C:ARG597 4.4 48.1 1.0
CG C:ARG597 4.5 65.3 1.0
CE1 C:HIS596 4.9 53.6 1.0
CD C:ARG597 4.9 50.9 1.0
O C:ARG597 5.0 50.1 1.0

Reference:

M.J.M.Anderson, A.N.Hayward, C.Uhlens, K.Shi, M.R.Pawlak, E.Grant, L.Greenburg, H.Aihara, R.L.Evans Iii, W.R.Gordon. Structural and Functional Analysis of Dystroglycan Cell Surface Cleavage Reveals A Novel Regulation Mechanism To Be Published.
Page generated: Sun Jul 13 14:53:58 2025

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