Atomistry » Chlorine » PDB 8uoj-8uwp » 8uqb
Atomistry »
  Chlorine »
    PDB 8uoj-8uwp »
      8uqb »

Chlorine in PDB 8uqb: Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1)

Enzymatic activity of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1)

All present enzymatic activity of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1):
2.3.2.23; 2.3.2.24; 2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1), PDB code: 8uqb was solved by Q.Hu, M.V.Botuyan, G.Mer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.37 / 2.48
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 101.948, 101.948, 86.992, 90, 90, 120
R / Rfree (%) 21.8 / 26

Other elements in 8uqb:

The structure of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1) (pdb code 8uqb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1), PDB code: 8uqb:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8uqb

Go back to Chlorine Binding Sites List in 8uqb
Chlorine binding site 1 out of 4 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4003

b:65.8
occ:1.00
 N A:SER60 3.3 76.6 1.0
N A:SER59 3.4 78.0 1.0
CG A:ARG57 3.7 81.3 1.0
O A:ARG57 3.7 58.2 1.0
CB A:SER59 3.8 79.1 1.0
CB A:ARG57 3.9 75.5 1.0
C A:ARG57 3.9 64.4 1.0
CA A:SER59 3.9 77.0 1.0
OG A:SER59 4.0 88.5 1.0
CB A:SER60 4.0 75.7 1.0
C A:SER59 4.1 75.7 1.0
OG A:SER60 4.1 81.7 1.0
NE A:ARG57 4.2 91.7 1.0
N A:VAL58 4.2 69.7 1.0
C A:VAL58 4.2 72.0 1.0
CA A:SER60 4.3 78.5 1.0
CZ A:ARG57 4.3 96.6 1.0
CA A:VAL58 4.4 67.4 1.0
CA A:ARG57 4.5 73.7 1.0
NH2 A:ARG57 4.6 98.0 1.0
CD A:ARG57 4.6 86.7 1.0
NH1 A:ARG57 4.8 103.1 1.0

Chlorine binding site 2 out of 4 in 8uqb

Go back to Chlorine Binding Sites List in 8uqb
Chlorine binding site 2 out of 4 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4004

b:50.0
occ:1.00
 OG A:SER1083 3.0 33.9 1.0
NZ A:LYS1066 3.5 54.9 1.0
CA A:SER1083 3.5 31.8 1.0
CB A:SER1083 3.6 35.5 1.0
CB A:ALA1068 3.8 29.6 1.0
NH2 A:ARG1090 4.1 39.3 1.0
N A:SER1083 4.2 34.0 1.0
O A:VAL1067 4.2 32.7 1.0
CD A:LYS1066 4.3 57.1 1.0
CE A:LYS1066 4.5 57.0 1.0
O A:GLY1082 4.7 33.0 1.0
CA A:ALA1068 4.7 36.0 1.0
C A:GLY1082 4.7 35.5 1.0
C A:SER1083 4.7 30.8 1.0
N A:ILE1084 4.8 35.6 1.0
C A:VAL1067 4.9 32.8 1.0
O A:HOH5027 5.0 33.2 1.0

Chlorine binding site 3 out of 4 in 8uqb

Go back to Chlorine Binding Sites List in 8uqb
Chlorine binding site 3 out of 4 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4005

b:43.1
occ:1.00
 N A:GLY3046 3.1 35.0 1.0
CA A:THR2090 3.4 35.9 1.0
N A:SER2091 3.4 39.9 1.0
N A:ALA3047 3.5 38.2 1.0
CA A:GLY3046 3.5 38.2 1.0
CB A:THR2090 3.5 39.3 1.0
C A:GLY3044 3.6 39.7 1.0
CA A:GLY3044 3.7 36.7 1.0
N A:ALA3045 3.7 35.8 1.0
C A:GLY3046 3.9 37.1 1.0
CG2 A:THR2090 3.9 29.6 1.0
C A:THR2090 3.9 39.8 1.0
C A:ALA3045 4.2 42.8 1.0
O A:GLY3044 4.2 43.0 1.0
OG A:SER2091 4.5 52.1 1.0
CA A:ALA3045 4.5 43.1 1.0
CA A:ALA3047 4.5 37.9 1.0
O A:ILE2089 4.6 36.7 1.0
N A:GLY3044 4.6 40.8 1.0
CA A:SER2091 4.6 43.5 1.0
CB A:ALA3047 4.6 40.1 1.0
CB A:SER2091 4.6 45.0 1.0
N A:THR2090 4.7 34.0 1.0
OG1 A:THR2090 4.8 40.0 1.0

Chlorine binding site 4 out of 4 in 8uqb

Go back to Chlorine Binding Sites List in 8uqb
Chlorine binding site 4 out of 4 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20- Residue Linker (Crystallization Condition 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4006

b:61.2
occ:1.00
 NH1 A:ARG2072 3.6 36.3 1.0
CD2 A:LEU2101 3.7 43.4 1.0
CD A:ARG2072 4.3 40.5 1.0
CG A:LEU2101 4.7 33.0 1.0
CZ A:ARG2072 4.7 40.5 1.0
CB A:LEU2101 4.8 34.2 1.0
CD1 A:LEU2101 5.0 32.4 1.0
NE A:ARG2072 5.0 46.8 1.0

Reference:

Q.Hu, M.V.Botuyan, G.Mer. Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 20-Residue Linker (Crystallization Condition 1) To Be Published.
Page generated: Sun Jul 13 14:59:59 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy