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Chlorine in PDB 8v1u: Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide

Enzymatic activity of Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide

All present enzymatic activity of Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide:
6.5.1.1;

Protein crystallography data

The structure of Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide, PDB code: 8v1u was solved by P.P.Tumbale, R.S.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.87 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.986, 96.832, 114.661, 90, 90, 90
R / Rfree (%) 18.8 / 21

Other elements in 8v1u:

The structure of Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide (pdb code 8v1u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide, PDB code: 8v1u:

Chlorine binding site 1 out of 1 in 8v1u

Go back to Chlorine Binding Sites List in 8v1u
Chlorine binding site 1 out of 1 in the Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:58.5
occ:1.00
 H A:GLU880 2.4 35.3 1.0
HB2 A:GLU880 3.0 36.6 1.0
N A:GLU880 3.1 29.6 1.0
HA A:ARG879 3.1 33.5 1.0
H A:ASP881 3.3 31.5 1.0
O A:VAL878 3.3 28.8 1.0
HH12 A:ARG877 3.3 52.2 1.0
HG3 A:GLU880 3.5 46.8 1.0
HH11 A:ARG877 3.5 52.2 1.0
CB A:GLU880 3.7 30.9 1.0
NH1 A:ARG877 3.7 37.9 1.0
OD1 A:ASP881 3.8 29.4 1.0
CA A:GLU880 3.8 29.0 1.0
N A:ASP881 3.9 28.9 1.0
CA A:ARG879 3.9 28.1 1.0
C A:ARG879 3.9 29.0 1.0
CG A:GLU880 4.1 35.4 1.0
O A:HOH1299 4.1 36.1 1.0
C A:VAL878 4.2 27.3 1.0
HD2 A:ARG879 4.2 33.4 1.0
CG A:ASP881 4.2 29.2 1.0
C A:GLU880 4.3 29.8 1.0
HE A:ARG879 4.3 35.4 1.0
HB3 A:ASP881 4.3 33.2 1.0
HB3 A:GLU880 4.5 36.6 1.0
N A:ARG879 4.5 26.3 1.0
CB A:ASP881 4.7 30.4 1.0
HA A:GLU880 4.7 33.2 1.0
OD2 A:ASP881 4.8 30.8 1.0
HG2 A:GLU880 4.8 46.8 1.0
CA A:ASP881 4.9 29.9 1.0
NE A:ARG879 5.0 29.6 1.0
HG11 A:VAL878 5.0 39.2 1.0

Reference:

P.P.Tumbale, R.S.Williams. Human Dna Ligase I F872A Bound to Adenylated Nicked Dna with A 5' Terminal Ribonucleotide To Be Published.
Page generated: Mon Aug 4 21:01:03 2025

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