Atomistry » Chlorine » PDB 8ux6-8vev » 8v8y
Atomistry »
  Chlorine »
    PDB 8ux6-8vev »
      8v8y »

Chlorine in PDB 8v8y: Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)

Enzymatic activity of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)

All present enzymatic activity of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form):
6.3.2.9;

Protein crystallography data

The structure of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form), PDB code: 8v8y was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.58 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.106, 68.693, 100.473, 90, 90, 90
R / Rfree (%) 15.7 / 18.6

Other elements in 8v8y:

The structure of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form) (pdb code 8v8y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form), PDB code: 8v8y:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8v8y

Go back to Chlorine Binding Sites List in 8v8y
Chlorine binding site 1 out of 3 in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:32.8
occ:1.00
 O A:HOH848 2.8 41.0 1.0
O A:HOH815 3.2 28.8 1.0
N A:SER122 3.3 15.8 1.0
NE A:ARG308 3.4 25.8 1.0
N A:THR123 3.5 15.0 1.0
C A:GLY120 3.6 16.6 1.0
CA A:GLY120 3.6 16.5 1.0
CB A:SER122 3.6 19.4 1.0
OG1 A:THR123 3.8 17.9 1.0
N A:LYS121 3.8 15.9 1.0
N A:GLY120 3.9 18.7 1.0
CA A:SER122 3.9 19.4 1.0
CG A:ARG308 3.9 23.3 1.0
O A:GLY120 4.0 15.5 1.0
OG A:SER122 4.1 26.3 1.0
C A:SER122 4.1 16.0 1.0
CD A:ARG308 4.2 34.7 1.0
O A:HOH700 4.3 33.7 1.0
CB A:THR123 4.3 15.3 1.0
C A:LYS121 4.3 14.2 1.0
NH2 A:ARG308 4.3 23.3 1.0
CZ A:ARG308 4.3 23.1 1.0
O A:HOH821 4.5 29.3 1.0
CA A:THR123 4.5 14.3 1.0
CA A:LYS121 4.7 17.1 1.0
CG A:LYS325 4.8 26.9 1.0
CE A:LYS325 4.8 37.6 1.0
CD1 A:LEU305 5.0 20.5 1.0

Chlorine binding site 2 out of 3 in 8v8y

Go back to Chlorine Binding Sites List in 8v8y
Chlorine binding site 2 out of 3 in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:54.7
occ:1.00
 O A:ALA288 4.0 21.2 1.0
O A:GLU158 4.8 17.8 1.0

Chlorine binding site 3 out of 3 in 8v8y

Go back to Chlorine Binding Sites List in 8v8y
Chlorine binding site 3 out of 3 in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:29.4
occ:1.00
 O A:HOH838 2.8 27.1 1.0
OG A:SER421 3.1 23.4 1.0
N A:SER421 3.1 21.1 1.0
CB A:SER421 3.8 21.4 1.0
CA A:ALA420 3.8 21.8 1.0
CG2 A:THR327 3.9 24.6 1.0
CB A:ALA420 3.9 24.7 1.0
C A:ALA420 4.0 21.3 1.0
N A:PHE428 4.0 20.4 1.0
CA A:SER421 4.0 20.2 1.0
CB A:PHE428 4.1 20.7 1.0
CD2 A:LEU422 4.3 26.1 1.0
CG A:LEU422 4.3 27.5 1.0
CA A:PHE428 4.4 21.8 1.0
N A:LEU422 4.5 21.9 1.0
CB A:THR327 4.6 26.8 1.0
C A:ASN427 4.6 20.8 1.0
C A:SER421 4.7 19.9 1.0
CD2 A:PHE428 4.8 25.2 1.0
CA A:ASN427 4.8 22.8 1.0
CG A:PHE428 4.9 21.8 1.0

Reference:

S.Seibold, S.Lovell, K.P.Battaile. Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Orthorhombic P Form) To Be Published.
Page generated: Sun Jul 13 15:16:40 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy