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Chlorine in PDB 8w0d: Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor

Protein crystallography data

The structure of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor, PDB code: 8w0d was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.61 / 2.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 139.487, 139.487, 544.117, 90, 90, 120
R / Rfree (%) 18.4 / 22.6

Other elements in 8w0d:

The structure of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor (pdb code 8w0d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor, PDB code: 8w0d:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 1 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl706

b:81.3
occ:1.00
OG C:SER90 3.7 56.8 1.0
N C:GLY91 4.1 50.8 1.0
O A:ALA117 4.5 56.1 1.0
CB A:PRO121 4.5 57.7 1.0
O C:HOH809 4.5 56.8 1.0
CA C:GLY91 4.5 57.6 1.0
OD2 C:ASP97 4.7 65.2 1.0
CD2 A:LEU145 4.7 47.0 1.0
CB C:SER90 4.8 53.9 1.0
CD1 A:PHE118 4.9 55.4 1.0
C A:ALA117 5.0 52.7 1.0
CB A:ALA117 5.0 52.3 1.0

Chlorine binding site 2 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 2 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl707

b:75.9
occ:1.00
N A:GLY91 3.8 42.3 1.0
CB B:PRO121 4.0 46.1 1.0
O A:HOH877 4.1 40.4 1.0
OG A:SER90 4.2 58.2 1.0
CA A:GLY91 4.2 38.6 1.0
O B:ALA117 4.4 49.7 1.0
CG B:PRO121 4.5 47.2 1.0
OD2 A:ASP97 4.9 45.6 1.0
C A:GLY91 4.9 36.5 1.0
C A:SER90 5.0 43.1 1.0
C B:ALA117 5.0 46.1 1.0
O A:HOH844 5.0 44.0 1.0

Chlorine binding site 3 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 3 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:90.6
occ:1.00
NH1 B:ARG618 3.8 86.5 1.0
NH2 B:ARG618 3.9 78.7 1.0
CZ B:ARG618 4.3 76.3 1.0
CG1 B:VAL614 4.8 70.2 1.0

Chlorine binding site 4 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 4 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl703

b:84.9
occ:1.00
O C:HOH821 3.2 58.8 1.0
OG B:SER90 3.7 62.5 1.0
N B:GLY91 4.3 51.5 1.0
O C:ALA117 4.5 64.0 1.0
CD1 C:PHE118 4.6 64.2 1.0
CA B:GLY91 4.7 58.7 1.0
CB C:PRO121 4.7 59.3 1.0
CE1 C:PHE118 4.8 65.0 1.0
OD2 B:ASP97 4.9 75.6 1.0
CD2 C:LEU145 4.9 58.5 1.0
CB B:SER90 4.9 57.4 1.0
C C:ALA117 5.0 64.1 1.0

Chlorine binding site 5 out of 5 in 8w0d

Go back to Chlorine Binding Sites List in 8w0d
Chlorine binding site 5 out of 5 in the Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl704

b:82.9
occ:1.00
OG C:SER201 3.3 85.3 1.0
NH1 C:ARG205 3.6 81.7 1.0
NH2 C:ARG205 3.9 76.1 1.0
CG C:PRO301 4.0 87.6 1.0
CB C:SER201 4.2 79.3 1.0
CZ C:ARG205 4.3 79.9 1.0
CE1 C:PHE197 4.4 71.0 1.0
CA C:SER201 4.8 75.9 1.0
CD1 C:PHE197 4.8 77.7 1.0
CD C:PRO301 4.8 99.4 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile. Crystal Structure of Acetyl-Coa Synthetase 2 From Candida Albicans in Complex with An Isopropyl Amp Ester Inhibitor To Be Published.
Page generated: Sun Jul 13 15:26:53 2025

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