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Chlorine in PDB 8wp5: Crystal Structure of LBUGT1 in Complex with Udp

Protein crystallography data

The structure of Crystal Structure of LBUGT1 in Complex with Udp, PDB code: 8wp5 was solved by D.Hu, G.Q.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.90 / 2.57
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.24, 122.24, 81.52, 90, 90, 90
R / Rfree (%) 24.3 / 28.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of LBUGT1 in Complex with Udp (pdb code 8wp5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of LBUGT1 in Complex with Udp, PDB code: 8wp5:

Chlorine binding site 1 out of 1 in 8wp5

Go back to Chlorine Binding Sites List in 8wp5
Chlorine binding site 1 out of 1 in the Crystal Structure of LBUGT1 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of LBUGT1 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:84.2
occ:1.00
C A:PRO351 3.5 58.8 1.0
N A:VAL353 3.5 56.5 1.0
CA A:PRO351 3.5 59.5 1.0
N A:GLN352 3.6 59.2 1.0
CB A:PRO351 3.8 66.0 1.0
N A:ALA354 3.8 61.7 1.0
CB A:VAL353 3.9 57.7 1.0
O A:PRO351 4.0 59.1 1.0
CA A:VAL353 4.1 62.8 1.0
O A:GLY251 4.2 119.7 1.0
O A:GLU250 4.3 124.6 1.0
C A:GLN352 4.4 57.5 1.0
C A:VAL353 4.5 61.1 1.0
CA A:GLN352 4.5 56.6 1.0
CB A:ALA354 4.6 59.6 1.0
CG2 A:VAL353 4.7 64.6 1.0
CG1 A:VAL353 4.8 63.8 1.0
CA A:ALA354 4.8 57.2 1.0
C A:GLY251 4.8 122.8 1.0
N A:PRO351 4.9 65.1 1.0
O2 A:UDP501 5.0 69.1 1.0

Reference:

S.Y.Li, G.Q.Wang, L.Long, J.L.Gao, Z.Q.Zhou, Y.H.Wang, J.M.Lv, G.D.Chen, D.Hu, I.Abe, H.Gao. Functional and Structural Dissection of Glycosyltransferases Underlying the Glycodiversity of Wolfberry-Derived Bioactive Ingredients Lycibarbarspermidines. To Be Published.
Page generated: Sun Jul 13 15:34:53 2025

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