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Chlorine in PDB 8y7w: Thymidine Kinase From Staphylococcus Aureus(Col Strain)

Enzymatic activity of Thymidine Kinase From Staphylococcus Aureus(Col Strain)

All present enzymatic activity of Thymidine Kinase From Staphylococcus Aureus(Col Strain):
2.7.1.21;

Protein crystallography data

The structure of Thymidine Kinase From Staphylococcus Aureus(Col Strain), PDB code: 8y7w was solved by A.Ashraf, R.K.Pal, M.I.Hassan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.14 / 2.30
Space group P 42 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.736, 71.736, 95.59, 90, 90, 90
R / Rfree (%) 19.3 / 22.7

Other elements in 8y7w:

The structure of Thymidine Kinase From Staphylococcus Aureus(Col Strain) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Thymidine Kinase From Staphylococcus Aureus(Col Strain) (pdb code 8y7w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Thymidine Kinase From Staphylococcus Aureus(Col Strain), PDB code: 8y7w:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8y7w

Go back to Chlorine Binding Sites List in 8y7w
Chlorine binding site 1 out of 2 in the Thymidine Kinase From Staphylococcus Aureus(Col Strain)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Thymidine Kinase From Staphylococcus Aureus(Col Strain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:66.2
occ:1.00
O A:HOH451 2.4 40.0 0.5
OE2 A:GLU24 3.1 28.9 1.0
NH2 A:ARG28 3.5 28.7 1.0
CG2 A:THR139 3.5 27.1 1.0
CD A:GLU24 3.6 32.6 1.0
CG A:GLU24 4.2 31.5 1.0
OE1 A:GLU24 4.2 31.7 1.0
CD2 A:LEU141 4.2 32.2 1.0
OG1 A:THR139 4.4 25.5 1.0
CB A:THR139 4.5 27.5 1.0
CZ A:ARG28 4.6 28.9 1.0
NE A:ARG28 4.8 33.6 1.0
NH2 A:ARG27 4.8 34.0 1.0

Chlorine binding site 2 out of 2 in 8y7w

Go back to Chlorine Binding Sites List in 8y7w
Chlorine binding site 2 out of 2 in the Thymidine Kinase From Staphylococcus Aureus(Col Strain)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Thymidine Kinase From Staphylococcus Aureus(Col Strain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:77.4
occ:1.00
N A:PHE120 3.4 39.3 1.0
CA A:ASP119 3.7 39.1 1.0
CB A:ASP119 3.9 40.6 1.0
C A:ASP119 3.9 38.3 1.0
CE2 A:PHE125 4.0 37.5 1.0
CB A:PHE120 4.1 48.2 1.0
CD1 A:PHE120 4.2 49.5 1.0
CA A:PHE120 4.2 42.0 1.0
CD1 A:LEU116 4.4 33.6 1.0
CD2 A:PHE125 4.6 36.4 1.0
CG A:PHE120 4.7 45.6 1.0

Reference:

A.Ashraf, R.K.Pal, M.I.Hassan. Thymidine Kinase From Staphylococcus Aureus(Col Strain) To Be Published.
Page generated: Sun Jul 13 15:45:14 2025

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