Chlorine in PDB 8yaq: Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands

The binding sites of Chlorine atom in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands (pdb code 8yaq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands, PDB code: 8yaq:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1001 b:139.4 occ:1.00 NH2 A:ARG717 2.7 119.2 1.0 NE A:ARG717 3.1 112.6 1.0 ND2 A:ASN623 3.2 115.2 1.0 CZ A:ARG717 3.3 113.2 1.0 CB A:ASN623 3.5 115.9 1.0 ND2 A:ASN751 3.6 126.9 1.0 CB A:ASN751 3.7 106.8 1.0 CG A:ASN623 3.8 116.7 1.0 CG A:ASN751 4.0 121.2 1.0 CD2 A:PHE749 4.0 115.3 1.0 CE3 A:TRP622 4.2 113.2 1.0 CZ3 A:TRP622 4.3 112.9 1.0 CD A:ARG717 4.4 107.0 1.0 SD A:MET666 4.5 141.0 1.0 NH1 A:ARG717 4.6 112.2 1.0 CE2 A:PHE749 4.6 107.5 1.0 CD1 A:LEU786 4.6 121.0 1.0 CA A:ASN623 4.7 115.1 1.0 N A:ASN623 4.8 114.5 1.0 CG A:PHE749 4.9 113.0 1.0 CB A:PHE749 4.9 106.9 1.0 CD1 A:LEU626 4.9 115.3 1.0 OD1 A:ASP621 5.0 135.1 1.0 CA A:ASN751 5.0 108.3 1.0

Chlorine binding site 2 out of 5 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1002 b:118.5 occ:1.00 N A:GLN490 2.9 96.6 1.0 N A:LEU887 3.2 111.5 1.0 N A:THR491 3.4 102.5 1.0 CA A:GLY489 3.5 101.3 1.0 C A:GLY489 3.5 99.5 1.0 CA A:PRO886 3.6 110.5 1.0 OG1 A:THR491 3.7 106.2 1.0 NE2 A:HIS140 3.8 103.5 1.0 CD2 A:HIS140 3.8 100.8 1.0 CA A:GLN490 3.8 93.0 1.0 C A:PRO886 3.9 113.2 1.0 CB A:GLN490 3.9 91.2 1.0 CB A:PRO886 4.0 110.3 1.0 CB A:LEU887 4.0 111.6 1.0 CG A:LEU887 4.1 108.2 1.0 C A:GLN490 4.1 99.1 1.0 N A:GLN492 4.1 108.9 1.0 CA A:LEU887 4.2 111.2 1.0 CA A:THR491 4.4 102.4 1.0 CD1 A:LEU887 4.6 106.0 1.0 CB A:THR491 4.6 102.3 1.0 O A:GLY489 4.6 101.5 1.0 N A:GLY489 4.7 103.8 1.0 C A:THR491 4.7 110.1 1.0 CB A:GLN492 4.7 108.4 1.0 O A:PHE488 4.9 118.7 1.0 N A:PRO886 4.9 111.5 1.0 N A:LEU888 4.9 115.5 1.0

Chlorine binding site 3 out of 5 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1001 b:129.8 occ:1.00 NH2 B:ARG717 2.8 114.3 1.0 ND2 B:ASN751 2.9 119.3 1.0 ND2 B:ASN623 3.1 112.7 1.0 NE B:ARG717 3.3 108.9 1.0 CZ B:ARG717 3.5 108.4 1.0 CB B:ASN623 3.6 107.0 1.0 CG B:ASN623 3.8 115.4 1.0 CG B:ASN751 3.9 116.0 1.0 CB B:ASN751 4.0 105.0 1.0 CD2 B:PHE749 4.0 106.3 1.0 CZ3 B:TRP622 4.1 108.2 1.0 CE3 B:TRP622 4.2 112.2 1.0 CD1 B:LEU786 4.2 106.1 1.0 CE2 B:PHE749 4.6 99.5 1.0 CD B:ARG717 4.6 104.7 1.0 CA B:ASN623 4.7 107.2 1.0 NH1 B:ARG717 4.8 104.2 1.0 SD B:MET666 4.9 131.5 1.0 N B:ASN623 4.9 111.4 1.0 CG B:LEU786 4.9 103.7 1.0 CG B:PHE749 5.0 105.7 1.0 OD1 B:ASN623 5.0 121.3 1.0

Chlorine binding site 4 out of 5 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1002 b:133.5 occ:1.00 CB B:SER889 3.6 114.8 1.0 N B:GLY890 3.7 114.2 1.0 CA B:SER889 3.7 116.8 1.0 ND1 B:HIS817 3.8 107.3 1.0 C3 D:BGC5 4.0 126.0 0.6 O5 D:BGC5 4.0 126.8 0.6 NE B:ARG486 4.2 116.3 1.0 NE2 B:GLN874 4.2 115.0 1.0 C B:SER889 4.3 117.2 1.0 O2 D:BGC5 4.3 127.4 0.6 C5 D:BGC5 4.4 124.5 0.6 CE2 B:PHE815 4.4 117.4 1.0 CB B:HIS817 4.5 101.4 1.0 CG B:HIS817 4.6 105.4 1.0 C2 D:BGC5 4.6 128.4 0.6 CG B:GLN874 4.6 105.7 1.0 C4 D:BGC5 4.7 123.6 0.6 C1 D:BGC5 4.7 127.3 0.6 CE1 B:HIS817 4.7 109.9 1.0 O B:LEU888 4.8 120.3 1.0 O3 D:BGC5 4.8 122.4 0.6 CZ B:PHE815 4.8 114.6 1.0 CA B:GLY890 4.8 110.5 1.0 CD B:ARG486 4.9 112.2 1.0 O4 D:BGC5 4.9 118.1 0.6 OG B:SER889 4.9 115.8 1.0 N B:SER889 5.0 111.3 1.0 CD B:GLN874 5.0 115.8 1.0 NH2 B:ARG486 5.0 115.3 1.0

Chlorine binding site 5 out of 5 in the Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of Cellodextrin Phosphorylase From Clostridium Thermocellum with Cellodextrin Ligands within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1003 b:113.1 occ:1.00 N B:GLN490 3.0 95.7 1.0 N B:LEU887 3.0 106.1 1.0 N B:THR491 3.2 102.5 1.0 OG1 B:THR491 3.5 109.5 1.0 CA B:PRO886 3.5 104.8 1.0 CB B:GLN490 3.6 97.7 1.0 CB B:PRO886 3.6 99.7 1.0 CA B:GLN490 3.7 95.4 1.0 C B:PRO886 3.8 107.3 1.0 C B:GLY489 3.8 98.7 1.0 CD2 B:HIS140 3.9 97.4 1.0 CB B:LEU887 3.9 103.9 1.0 CA B:GLY489 3.9 93.8 1.0 C B:GLN490 4.0 101.0 1.0 CA B:LEU887 4.0 106.0 1.0 N B:GLN492 4.1 102.0 1.0 NE2 B:HIS140 4.1 99.1 1.0 CG B:LEU887 4.1 100.5 1.0 CA B:THR491 4.2 98.4 1.0 CB B:THR491 4.4 101.1 1.0 CG B:GLN492 4.4 102.1 1.0 N B:LEU888 4.6 112.7 1.0 CD1 B:LEU887 4.6 99.1 1.0 C B:THR491 4.6 102.6 1.0 CG B:GLN490 4.7 98.0 1.0 C B:LEU887 4.8 113.2 1.0 CB B:GLN492 4.8 98.8 1.0 O B:GLY489 4.9 108.0 1.0 N B:PRO886 4.9 103.8 1.0 O B:PRO886 5.0 111.1 1.0 N B:GLY489 5.0 101.6 1.0

T.Kuga, N.Sunagawa, K.Igarashi. Structure and Dynamics of Cellodextrin Phosphorylase From Clostridium Thermocellum Determine Chain Length and Crystalline Packing of Highly Ordered Cellulose II Synthesized in Vitro To Be Published.