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Chlorine in PDB 8yu6: The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate

Protein crystallography data

The structure of The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate, PDB code: 8yu6 was solved by L.A.Varfolomeeva, N.S.Shipkov, N.I.Dergousova, K.M.Boyko, T.V.Tikhonova, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.85 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.76, 96.3, 148.76, 90, 90, 90
R / Rfree (%) 16.4 / 19.5

Other elements in 8yu6:

The structure of The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate also contains other interesting chemical elements:

Copper (Cu) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate (pdb code 8yu6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate, PDB code: 8yu6:

Chlorine binding site 1 out of 1 in 8yu6

Go back to Chlorine Binding Sites List in 8yu6
Chlorine binding site 1 out of 1 in the The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl607

b:19.7
occ:0.70
NH1 B:ARG305 3.2 18.1 1.0
N B:ASP177 3.4 16.8 1.0
CG B:ASP177 3.4 23.3 1.0
O B:HOH914 3.5 25.5 1.0
NH2 B:ARG305 3.6 19.7 1.0
CD B:PRO176 3.6 15.7 1.0
CB B:ASP177 3.7 18.9 1.0
OD1 B:ASP177 3.7 21.9 1.0
N B:PRO176 3.8 15.7 1.0
CZ B:ARG305 3.8 17.9 1.0
OD2 B:ASP177 3.8 23.1 1.0
CB B:THR175 4.0 16.2 1.0
CB B:PRO176 4.0 18.2 1.0
O B:HOH853 4.1 20.3 0.5
CA B:ASP177 4.1 18.9 1.0
C B:PRO176 4.2 17.8 1.0
CG B:PRO176 4.2 16.9 1.0
CA B:PRO176 4.2 18.2 1.0
O B:HOH1153 4.2 30.6 0.5
OG1 B:THR175 4.3 17.5 1.0
C B:THR175 4.5 17.3 1.0
CA B:THR175 4.8 16.2 1.0
CG2 B:THR175 5.0 15.8 1.0

Reference:

L.A.Varfolomeeva, N.S.Shipkov, N.I.Dergousova, K.M.Boyko, T.V.Tikhonova, V.O.Popov. The Structure of Thiocyanate Dehydrogenase Mutant with the H447Q Substitution From Pelomicrobium Methylotrophicum (Pmtcdh H447Q), Activated By Crystal Soaking with 1MM CUCL2 and 1 Mm Sodium Ascorbate To Be Published.
Page generated: Sun Jul 13 15:48:02 2025

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