Chlorine in PDB 8z1j: Sfx Structure of Dark Adapted Cracry

The structure of Sfx Structure of Dark Adapted Cracry, PDB code: 8z1j was solved by M.Maestre-Reyna, Y.Hosokawa, P.-H.Wang, M.Saft, N.Caramello, S.Engilberge, S.Franz-Badur, E.P.G.Ngura Putu, M.Nakamura, W.-J.Wu, H.-Y.Wu, C.-C.Lee, W.-C.Huang, K.-F.Huang, Y.-K.Chang, C.-H.Yang, W.-T.Lin, K.-C.Yang, Y.Ban, T.Imura, A.Kazuoka, E.Tanida, S.Owada, Y.Joti, R.Tanaka, T.Tanaka, F.Luo, K.Tono, S.Kiontke, L.Korf, Y.Umena, T.Tosha, Y.Bessho, E.Nango, S.Iwata, A.Royant, M.-D.Tsai, J.Yamamoto, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.06 / 1.64
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.84, 65.6, 153.13, 90, 90, 90
R / Rfree (%)	14 / 15.7

The binding sites of Chlorine atom in the Sfx Structure of Dark Adapted Cracry (pdb code 8z1j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Sfx Structure of Dark Adapted Cracry, PDB code: 8z1j:

Chlorine binding site 1 out of 1 in the Sfx Structure of Dark Adapted Cracry


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sfx Structure of Dark Adapted Cracry within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl602 b:36.6 occ:1.00 H A:SER416 2.5 30.4 1.0 HH12 A:ARG413 2.9 44.6 1.0 HH22 A:ARG413 3.0 46.5 1.0 HA A:TYR415 3.0 29.8 1.0 HD1 A:PHE420 3.1 42.9 1.0 N A:SER416 3.3 25.3 1.0 HB3 A:SER416 3.4 29.6 1.0 HB2 A:PHE420 3.4 31.6 1.0 NH1 A:ARG413 3.7 37.1 1.0 HD1 A:TYR415 3.7 41.4 1.0 NH2 A:ARG413 3.8 38.7 1.0 HA A:PHE420 3.8 31.3 1.0 CA A:TYR415 3.8 24.8 1.0 CD1 A:PHE420 4.0 35.7 1.0 C A:TYR415 4.1 25.8 1.0 CB A:SER416 4.1 24.7 1.0 HB3 A:TYR415 4.1 29.6 1.0 HB2 A:SER416 4.1 29.6 1.0 HZ3 A:LYS423 4.2 52.8 1.0 CB A:PHE420 4.2 26.3 1.0 CZ A:ARG413 4.2 37.9 1.0 CA A:SER416 4.3 22.9 1.0 HB A:VAL419 4.3 40.9 1.0 CA A:PHE420 4.4 26.1 1.0 HG12 A:VAL419 4.4 55.4 1.0 HH11 A:ARG413 4.4 44.6 1.0 O A:VAL414 4.4 28.3 1.0 HH21 A:ARG413 4.5 46.5 1.0 CB A:TYR415 4.5 24.7 1.0 H A:PHE420 4.5 30.9 1.0 N A:PHE420 4.6 25.8 1.0 CG A:PHE420 4.6 24.6 1.0 CD1 A:TYR415 4.6 34.5 1.0 O A:SER416 4.7 26.6 1.0 N A:TYR415 4.9 24.6 1.0 HE1 A:PHE420 4.9 48.0 1.0 CE1 A:PHE420 5.0 40.0 1.0 HA A:SER416 5.0 27.4 1.0

M.Maestre-Reyna, Y.Hosokawa, P.-H.Wang, M.Saft, N.Caramello, S.Engilberge, S.Franz-Badur, E.P.G.Ngura Putu, M.Nakamura, W.-J.Wu, H.-Y.Wu, C.-C.Lee, W.-C.Huang, K.-F.Huang, Y.-K.Chang, C.-H.Yang, W.-T.Lin, K.-C.Yang, Y.Ban, T.Imura, A.Kazuoka, E.Tanida, S.Owada, Y.Joti, R.Tanaka, T.Tanaka, F.Luo, K.Tono, S.Kiontke, L.Korf, Y.Umena, T.Tosha, Y.Bessho, E.Nango, S.Iwata, A.Royant, M.-D.Tsai, J.Yamamoto, L.-O.Essen. Capturing Structural Intermediates in An Animal-Like Cryptochrome Photoreceptor By Time-Resolved Crystallography Sci Adv 2025.
ISSN: ESSN 2375-2548