Chlorine in PDB 8z29: Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263)

The structure of Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263), PDB code: 8z29 was solved by B.K.J.Godsora, P.Bhaumik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.85
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	157.55, 157.55, 106.28, 90, 90, 120
R / Rfree (%)	19 / 23

The binding sites of Chlorine atom in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263) (pdb code 8z29). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263), PDB code: 8z29:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:50.4 occ:1.00 O A:HOH625 2.4 11.1 1.0 OH A:TYR203 3.6 29.0 1.0 CA A:ALA404 4.3 26.2 1.0 CZ A:TYR203 4.4 32.5 1.0 CE2 A:TYR203 4.4 35.7 1.0 N A:ALA404 4.4 27.6 1.0 O A:ASP403 4.5 29.5 1.0 O A:HOH607 4.5 21.1 1.0 CD A:LYS407 4.5 71.0 1.0 C A:ASP403 4.5 30.2 1.0 CE A:LYS407 4.6 79.5 1.0 NZ A:LYS407 4.7 83.6 1.0 CB A:ALA404 4.7 26.6 1.0 CB A:ASP403 4.7 33.4 1.0 CG A:ASP403 4.8 36.6 1.0 CB A:LYS407 4.9 57.9 1.0 OD2 A:ASP403 5.0 38.7 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:38.7 occ:1.00 O A:GLY153 3.4 22.0 1.0 O A:GLY79 3.7 41.8 1.0 CA A:GLY80 4.0 29.5 1.0 CE A:LYS114 4.0 30.8 1.0 C A:GLY79 4.1 30.9 1.0 N A:GLY80 4.3 29.9 1.0 NZ A:LYS114 4.3 28.7 1.0 CB A:ASP154 4.6 28.8 1.0 C A:GLY153 4.7 19.9 1.0 OE1 A:GLN99 4.8 28.4 1.0 CG A:ASP154 4.8 36.0 1.0 CD A:GLN99 4.9 29.6 1.0 CD A:LYS114 4.9 32.8 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl501 b:52.2 occ:1.00 NH2 A:ARG64 4.1 38.1 1.0 NH1 A:ARG64 4.1 48.7 1.0 CE2 B:PHE10 4.1 27.4 1.0 CD1 B:LEU4 4.2 66.8 1.0 CZ A:ARG64 4.5 44.2 1.0 CD2 B:PHE10 4.7 29.2 1.0 OE1 B:GLU11 4.7 50.4 1.0 CD2 B:LEU4 4.7 62.9 1.0 CG B:GLU11 4.8 52.3 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl502 b:48.7 occ:1.00 O B:ARG193 3.4 26.1 0.5 O B:ARG193 3.4 26.8 0.5 OG1 B:THR197 4.1 22.0 1.0 CA B:GLY380 4.3 24.6 1.0 C B:ARG193 4.4 27.7 0.5 C B:ARG193 4.4 28.5 0.5 CG B:ARG193 4.5 27.4 0.5 CG B:ARG193 4.6 31.2 0.5 O B:GLY380 4.8 30.1 1.0 CB B:ALA196 4.9 21.4 1.0 C B:GLY380 5.0 24.4 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Apo Aspergillus Terreus Glutamate Dehydrogenase (Atgdh) Deletion Mutant (T262-A263) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl503 b:46.5 occ:1.00 O B:ARG142 4.0 19.2 1.0 O A:ARG142 4.1 25.7 1.0 CD B:ARG142 4.2 20.2 1.0 CG B:ARG142 4.3 21.0 1.0 ND1 B:HIS143 4.4 13.1 1.0 ND1 A:HIS143 4.4 28.9 1.0 CE1 B:HIS143 4.6 12.7 1.0 CG A:ARG142 4.6 29.1 1.0 CB B:ARG142 4.6 22.8 1.0 CD A:ARG142 4.7 29.0 1.0 C B:ARG142 4.8 19.1 1.0 CE1 A:HIS143 4.9 31.3 1.0 C A:ARG142 4.9 26.8 1.0

B.K.J.Godsora, P.Das, P.K.Mishra, A.Sairaman, S.Kaledhonkar, N.S.Punekar, P.Bhaumik. Conformational Flexibility Associated with Remote Residues Regulates the Kinetic Properties of Glutamate Dehydrogenase. Protein Sci. V. 34 70038 2025.
ISSN: ESSN 1469-896X
PubMed: 39981924
DOI: 10.1002/PRO.70038