Chlorine in PDB 8zpe: Sfx Structure of the Alanine Racemase From Bacillus Subtilis

All present enzymatic activity of Sfx Structure of the Alanine Racemase From Bacillus Subtilis:
5.1.1.1;

The structure of Sfx Structure of the Alanine Racemase From Bacillus Subtilis, PDB code: 8zpe was solved by J.Kim, K.H.Nam, Y.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	79.39 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	87.6, 108.7, 89.1, 90, 115, 90
R / Rfree (%)	17.8 / 23.2

The binding sites of Chlorine atom in the Sfx Structure of the Alanine Racemase From Bacillus Subtilis (pdb code 8zpe). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Sfx Structure of the Alanine Racemase From Bacillus Subtilis, PDB code: 8zpe:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Sfx Structure of the Alanine Racemase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sfx Structure of the Alanine Racemase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:44.0 occ:1.00 NE A:ARG139 3.0 32.0 1.0 NH2 A:ARG139 3.1 34.8 1.0 O A:HOH519 3.3 41.2 1.0 ND2 A:ASN132 3.5 37.9 1.0 CZ A:ARG139 3.5 36.5 1.0 O A:HOH547 3.6 39.0 1.0 CB A:ARG139 3.7 42.1 1.0 N A:LEU140 3.9 33.9 1.0 O A:LEU140 4.1 35.9 1.0 CG A:MET137 4.1 43.2 1.0 CD A:ARG139 4.2 32.1 1.0 CG A:ARG139 4.2 35.7 1.0 CB A:HIS169 4.4 42.5 1.0 CB A:LEU140 4.4 38.9 1.0 CG A:ASN132 4.4 42.0 1.0 OD1 A:ASN132 4.5 40.0 1.0 CB A:MET137 4.5 42.0 1.0 CA A:LEU140 4.6 36.6 1.0 C2' A:LLP39 4.7 42.1 1.0 C A:LEU140 4.7 37.8 1.0 CA A:ARG139 4.7 39.0 1.0 C A:ARG139 4.8 35.7 1.0 NH1 A:ARG139 4.8 34.1 1.0 CG A:HIS169 5.0 47.3 1.0

Chlorine binding site 2 out of 4 in the Sfx Structure of the Alanine Racemase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sfx Structure of the Alanine Racemase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl401 b:47.7 occ:1.00 NE B:ARG139 3.2 36.4 1.0 ND2 B:ASN132 3.3 44.3 1.0 O B:HOH530 3.3 39.4 1.0 O B:HOH527 3.3 35.4 1.0 NH2 B:ARG139 3.4 38.2 1.0 CZ B:ARG139 3.8 37.4 1.0 N B:LEU140 3.8 37.0 1.0 CB B:ARG139 3.9 33.7 1.0 O B:LEU140 4.0 41.2 1.0 CB B:LEU140 4.2 42.3 1.0 CG B:ASN132 4.2 43.3 1.0 OD1 B:ASN132 4.2 41.8 1.0 CG B:ARG139 4.3 32.9 1.0 CD B:ARG139 4.3 31.7 1.0 CA B:LEU140 4.4 41.5 1.0 CG B:MET137 4.4 41.2 1.0 CB B:HIS169 4.5 38.0 1.0 C B:LEU140 4.5 40.6 1.0 C B:ARG139 4.7 37.1 1.0 CA B:ARG139 4.8 38.4 1.0 CB B:MET137 4.9 42.3 1.0 O B:HOH506 4.9 38.3 1.0 CG B:LEU140 4.9 41.4 1.0

Chlorine binding site 3 out of 4 in the Sfx Structure of the Alanine Racemase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Sfx Structure of the Alanine Racemase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl401 b:50.8 occ:1.00 NE C:ARG139 3.2 38.6 1.0 O C:HOH508 3.3 43.5 1.0 NH2 C:ARG139 3.3 49.3 1.0 ND2 C:ASN132 3.6 46.1 1.0 CB C:ARG139 3.6 44.0 1.0 CZ C:ARG139 3.7 44.9 1.0 N C:LEU140 3.8 41.0 1.0 O C:LEU140 4.0 45.6 1.0 CG C:ARG139 4.2 38.9 1.0 CD C:ARG139 4.2 41.7 1.0 CG C:MET137 4.3 53.5 1.0 CB C:HIS169 4.4 47.5 1.0 OD1 C:ASN132 4.4 46.0 1.0 CG C:ASN132 4.4 47.0 1.0 CB C:LEU140 4.5 41.8 1.0 CA C:LEU140 4.6 43.8 1.0 C C:LEU140 4.6 44.6 1.0 CA C:ARG139 4.6 44.3 1.0 C C:ARG139 4.7 42.8 1.0 C2' C:LLP39 4.8 52.5 1.0 CB C:MET137 4.8 50.6 1.0 CG C:LEU140 5.0 38.7 1.0 N C:ARG139 5.0 45.7 1.0

Chlorine binding site 4 out of 4 in the Sfx Structure of the Alanine Racemase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Sfx Structure of the Alanine Racemase From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl401 b:45.5 occ:1.00 NE D:ARG139 3.1 39.3 1.0 NH2 D:ARG139 3.3 37.7 1.0 O D:HOH522 3.3 39.7 1.0 O D:HOH514 3.4 34.1 1.0 O D:HOH518 3.4 36.8 1.0 ND2 D:ASN132 3.4 37.0 1.0 CZ D:ARG139 3.6 37.0 1.0 CB D:ARG139 3.8 42.0 1.0 N D:LEU140 3.8 38.9 1.0 O D:LEU140 4.0 40.9 1.0 CG D:ARG139 4.1 40.0 1.0 CD D:ARG139 4.2 36.1 1.0 CG D:MET137 4.3 44.6 1.0 CB D:LEU140 4.3 34.5 1.0 CG D:ASN132 4.4 39.6 1.0 CB D:HIS169 4.4 37.7 1.0 OD1 D:ASN132 4.4 40.1 1.0 CA D:LEU140 4.5 38.2 1.0 C D:LEU140 4.6 38.2 1.0 C D:ARG139 4.8 38.8 1.0 CB D:MET137 4.8 41.0 1.0 C2' D:LLP39 4.8 44.8 1.0 CA D:ARG139 4.8 41.3 1.0 CG D:LEU140 4.9 40.4 1.0 NH1 D:ARG139 4.9 43.6 1.0

J.Kim, K.H.Nam, Y.Cho. Sfx Structure of the Alanine Racemase From Bacillus Subtilis To Be Published.