Atomistry » Chlorine » PDB 9aue-9bjl » 9b0c
Atomistry »
  Chlorine »
    PDB 9aue-9bjl »
      9b0c »

Chlorine in PDB 9b0c: Crystal Structure of GENB2 in Complex with Gentamicin X2.

Protein crystallography data

The structure of Crystal Structure of GENB2 in Complex with Gentamicin X2., PDB code: 9b0c was solved by P.S.Bury, N.C.Araujo, G.S.Oliveira, M.V.B.Dias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.64 / 1.66
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 75.407, 104.187, 104.653, 90, 90, 90
R / Rfree (%) 16.5 / 19.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of GENB2 in Complex with Gentamicin X2. (pdb code 9b0c). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of GENB2 in Complex with Gentamicin X2., PDB code: 9b0c:

Chlorine binding site 1 out of 1 in 9b0c

Go back to Chlorine Binding Sites List in 9b0c
Chlorine binding site 1 out of 1 in the Crystal Structure of GENB2 in Complex with Gentamicin X2.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of GENB2 in Complex with Gentamicin X2. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:20.2
occ:0.50
O A:HOH740 3.0 24.7 1.0
O A:HOH706 3.2 16.2 1.0
OG1 A:THR98 3.5 16.3 1.0
CG2 A:THR98 3.8 15.6 1.0
CB A:ALA101 3.9 14.4 1.0
CB A:LYS97 4.2 13.9 1.0
CB A:THR98 4.2 14.3 1.0
N A:THR98 4.2 14.1 1.0
O A:HOH920 4.7 39.6 1.0
C A:LYS97 4.7 17.1 1.0
N A:LYS97 4.7 12.4 1.0
CA A:LYS97 4.7 13.9 1.0
CA A:THR98 4.9 12.9 1.0

Reference:

G.S.Oliveira, P.Dos S Bury, F.Huang, Y.Li, N.C.Araujo, J.Zhou, Y.Sun, F.J.Leeper, P.F.Leadlay, M.V.B.Dias. Structural and Functional Basis of GENB2 Isomerase Activity From Gentamicin Biosynthesis. Acs Chem.Biol. 2024.
ISSN: ESSN 1554-8937
PubMed: 39207862
DOI: 10.1021/ACSCHEMBIO.4C00334
Page generated: Sun Jul 13 16:01:26 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy