Chlorine in PDB 9ba7: Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound

The structure of Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound, PDB code: 9ba7 was solved by M.Lee, A.T.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.94 / 2.88
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	202.466, 50.093, 62.249, 90, 90, 90
R / Rfree (%)	21.4 / 26.8

The binding sites of Chlorine atom in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound (pdb code 9ba7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound, PDB code: 9ba7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl306 b:92.6 occ:1.00 N A:MET1 2.7 67.1 1.0 SD A:MET1 3.9 103.3 1.0 CA A:MET1 4.0 74.9 1.0 OH A:TYR3 4.3 83.5 1.0 CB A:MET1 4.5 77.2 1.0 CZ A:TYR3 4.8 73.7 1.0 CG A:MET1 5.0 67.2 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl307 b:120.4 occ:1.00 N A:GLU98 3.3 91.9 1.0 CB A:GLU98 3.5 91.3 1.0 NE A:ARG258 3.7 107.1 1.0 CD A:ARG258 3.8 113.9 1.0 CZ A:ARG258 3.8 112.5 1.0 CB A:LEU97 3.9 89.1 1.0 N A:LEU97 3.9 82.6 1.0 CA A:GLU98 4.0 91.9 1.0 NH1 A:ARG258 4.0 112.8 1.0 CA A:LEU97 4.2 85.4 1.0 C A:LEU97 4.2 75.8 1.0 SG A:CYS254 4.3 110.0 1.0 NH2 A:ARG258 4.3 120.8 1.0 CD1 A:LEU97 4.7 93.0 1.0 CG A:GLU98 4.7 91.7 1.0 O A:THR95 4.7 86.9 1.0 C A:CYS96 4.8 87.7 1.0 CD A:GLU98 4.8 105.9 1.0 CG A:LEU97 4.9 82.4 1.0 OE2 A:GLU98 4.9 102.9 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl303 b:95.4 occ:1.00 CZ B:ARG202 3.0 85.0 1.0 NH1 B:ARG202 3.1 85.7 1.0 NE B:ARG202 3.1 82.3 1.0 OE2 B:GLU109 3.2 67.0 1.0 CD B:ARG202 3.4 73.8 1.0 O B:LEU177 3.5 87.3 1.0 NH2 B:ARG202 3.5 86.1 1.0 CD B:GLU109 4.1 75.7 1.0 CB B:LEU177 4.1 78.9 1.0 CG B:GLU109 4.1 69.3 1.0 CE1 B:TYR179 4.3 82.1 1.0 CG B:ARG202 4.4 71.2 1.0 C B:LEU177 4.5 81.8 1.0 O B:ILE175 4.5 73.3 1.0 CD1 B:ILE175 4.7 79.3 1.0 CA B:LEU177 4.7 72.7 1.0 CG1 B:ILE175 4.7 64.5 1.0 CD1 B:ILE206 4.7 66.2 1.0 N B:LEU177 4.8 78.6 1.0 CB B:GLU109 4.9 63.1 1.0 CD2 B:LEU177 5.0 78.1 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl304 b:94.9 occ:1.00 NH1 B:ARG258 3.0 105.6 1.0 N B:GLU98 3.1 79.9 1.0 N B:LEU97 3.2 74.8 1.0 C B:CYS96 3.7 72.0 1.0 CB B:GLU98 3.7 72.2 1.0 CA B:CYS96 3.8 86.0 1.0 O B:THR95 3.8 95.1 1.0 CA B:LEU97 3.9 71.2 1.0 C B:LEU97 3.9 68.9 1.0 CA B:GLU98 4.0 71.5 1.0 CB B:LEU97 4.0 67.1 1.0 CZ B:ARG258 4.1 108.6 1.0 O B:CYS96 4.5 71.9 1.0 C B:THR95 4.6 83.5 1.0 NH2 B:ARG258 4.7 113.2 1.0 N B:ARG99 4.7 69.4 1.0 N B:CYS96 4.7 80.1 1.0 CB B:CYS96 4.8 91.6 1.0 NE B:ARG258 4.9 99.9 1.0 CD B:ARG258 4.9 88.4 1.0 C B:GLU98 4.9 67.1 1.0 OE1 B:GLU98 5.0 93.3 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Vibrio Cholerae N150T Nfeob Variant with A Single Gdp Molecule Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl305 b:131.3 occ:1.00 N B:MET1 2.5 80.2 1.0 OH B:TYR3 3.8 71.3 1.0 CA B:MET1 4.0 64.8 1.0 CZ B:TYR3 4.0 63.2 1.0 CE1 B:TYR3 4.2 60.3 1.0 N B:LYS2 4.6 66.4 1.0 CE2 B:TYR3 4.7 63.1 1.0 C B:MET1 4.8 74.8 1.0 CB B:MET1 4.8 71.2 1.0 CD1 B:TYR3 5.0 66.2 1.0

M.Lee, K.Magante, C.Gomez-Garzon, S.M.Payne, A.T.Smith. Structural Determinants of Vibrio Cholerae Feob Nucleotide Promiscuity. J.Biol.Chem. V. 300 07663 2024.
ISSN: ESSN 1083-351X
PubMed: 39128725
DOI: 10.1016/J.JBC.2024.107663